biojava · josemduarte · May 11, 2018 · May 5, 2018 · May 5, 2018 · May 5, 2018
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/sequence/compound/ABITracerCompoundSet.java b/biojava-core/src/main/java/org/biojava/nbio/core/sequence/compound/ABITracerCompoundSet.java
@@ -0,0 +1,65 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ * Created on 05-06-2018
+ */
+
+package org.biojava.nbio.core.sequence.compound;
+
+import org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet;
+
+/**
+ * @author Maximilian Greil
+ */
+public class ABITracerCompoundSet extends AbstractNucleotideCompoundSet<NucleotideCompound> {
+
+    private static class InitaliseOnDemand {
+        public static final ABITracerCompoundSet INSTANCE = new ABITracerCompoundSet();
+    }
+
+    public static ABITracerCompoundSet getABITracerCompoundSet() {
+        return InitaliseOnDemand.INSTANCE;
+    }
+
+    public ABITracerCompoundSet() {
+        addNucleotideCompound("A", "T");
+        addNucleotideCompound("T", "A");
+        addNucleotideCompound("G", "C");
+        addNucleotideCompound("C", "G");
+        addNucleotideCompound("N", "N");
+        addNucleotideCompound("K", "K");
+        addNucleotideCompound("Y", "Y");
+        addNucleotideCompound("R", "R");
+        addNucleotideCompound("-", "-");
+    }
+
+    @Override
+    public NucleotideCompound newNucleotideCompound(String base, String complement, String... equivalents) {
+        if(equivalents.length == 0) {
+            return new NucleotideCompound(base, this, complement);
+        }
+        else {
+            NucleotideCompound[] compounds = new NucleotideCompound[equivalents.length];
+            for(int i=0; i<compounds.length; i++) {
+                compounds[i] = getCompoundForString(equivalents[i]);
+            }
+            return new NucleotideCompound(base, this, complement, compounds);
+        }
+    }
+}