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Bugfixes 4.2 #547

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Merged
josemduarte merged 5 commits into from
Jul 29, 2016
Merged

Bugfixes 4.2 #547

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bceab29
Adding test for genome mapping
andreasprlic Jul 29, 2016
f2f4143
new utility class for chromosome mappings.
andreasprlic Jul 29, 2016
04b8f4a
new utility class for chromosome mappings.
andreasprlic Jul 29, 2016
f63309d
adding new dependency on guava
andreasprlic Jul 29, 2016
795be8f
new utility class for chromosome mappings.
andreasprlic Jul 29, 2016
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6 changes: 6 additions & 0 deletions biojava-genome/pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -71,6 +71,12 @@
</plugins>
</build>
<dependencies>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<scope>compile</scope>
<version>19.0</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
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31 changes: 31 additions & 0 deletions biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/genename/ChromPos.java
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Original file line number Diff line number Diff line change
@@ -0,0 +1,31 @@
package org.biojava.nbio.genome.parsers.genename;

/**
* Created by ap3 on 27/10/2014.
*/
public class ChromPos {

int pos;
int phase;

public int getPhase() {
return phase;
}

public void setPhase(int phase) {
this.phase = phase;
}

public int getPos() {
return pos;
}

public void setPos(int pos) {
this.pos = pos;
}

public ChromPos(int pos, int phase){
this.pos = pos;
this.phase = phase;
}
}
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