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Parameters, StartupParameters and UserArgumentProcessor classes. The old CEMC classed have been renamed to a more general, since the new version supports any pairwise algorithm to generate the seed.
Some bugs in the cloning have also been fixed
Extend the test for Multiple Alignment Scores
sbliven
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Jun 26, 2015
Polishing demo & gui code for mutliple alignments
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The code of the Multiple Alignment has been cleaned and some bugs fixed.