Skip to content

Some ModelCIF files from ModelArchive failed to be parsed with an EmptyColumnException #1054

@josemduarte

Description

@josemduarte

Example file available at: https://modelarchive.org/doi/10.5452/ma-coffe-slac-c100000_g1_i1
Here is the error:

Exception in thread "main" org.rcsb.cif.EmptyColumnException: column pdbx_atcc is undefined
	at org.rcsb.cif.model.Column$EmptyColumn.getStringData(Column.java:111)
	at org.rcsb.cif.schema.DelegatingStrColumn.get(DelegatingStrColumn.java:17)
	at org.biojava.nbio.structure.io.cif.CifStructureConsumerImpl.addInformationFromEntitySrcNat(CifStructureConsumerImpl.java:1406)

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions