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Commits on Mar 5, 2025

• [maven-release-plugin] prepare release biojava-7.2.1

  josemduarte

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• Merge pull request #1108 from biojava/cif-ihm

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Commits on Mar 4, 2025

• Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java

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Commits on Feb 28, 2025

• Deal with missing strand_id

  josemduarte

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  2841770

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• Revert "Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref"

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• Logging

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• Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref

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• Deal with some missing fields in IHM

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  committed
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Commits on Feb 27, 2025

• Updates after release

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• [maven-release-plugin] prepare for next development iteration

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  committed
  6da7fd9

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• [maven-release-plugin] prepare release biojava-7.2.0

  josemduarte

  committed
  48992a6

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• Merge pull request #1106 from josemduarte/cifparsing-lenient

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• Merge pull request #1107 from josemduarte/asafix-multimodel

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Commits on Feb 22, 2025

• Review comment

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  a5b46ab

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• Fix: first model is model index 0

  josemduarte

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Commits on Feb 21, 2025

• Bugfix: ASA calculation was by default using all models. Now it will use model 1 by default. Added new constructor to choose model.

  josemduarte

  committed
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• Another safeguard, that applies to some PDB-IHM entries

  josemduarte

  committed
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• Lenient to missing atom_site.occupancy

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  committed
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• Handle more missing fields in struct_ref_seq

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• Update guava dependency version to 33.4.0-jre

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Commits on Jan 9, 2025

• Avoiding a (harmless) error in mvn site by upgrading javadoc plugin

  josemduarte

  committed
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• Docs

  josemduarte

  committed
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• Forcing enforcer plugin upgrade: somehow version wasn't being taken from pluginManagement. Hopefully this fixes issue in CI building with java 17

  josemduarte

  committed
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• Hopefully good final solution for generating apidocs site

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Commits on Jan 8, 2025

• Updating after release

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  committed
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• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
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• [maven-release-plugin] prepare release biojava-7.1.4

  josemduarte

  committed
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• Hopefully fixing issue with site:deploy which was failing (as part of release:perform)

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  committed
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• [maven-release-plugin] rollback the release of biojava-7.1.4

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• [maven-release-plugin] prepare for next development iteration

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  committed
  76dfee8

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• [maven-release-plugin] prepare release biojava-7.1.4

  josemduarte

  committed
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• Adding explicit plugin versions to profile "release". Somehow the profile doesn't seem to inherit from pluginManagement

  josemduarte

  committed
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• [maven-release-plugin] rollback the release of biojava-7.1.4

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  committed
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• [maven-release-plugin] prepare for next development iteration

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  committed
  3ec109c

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• [maven-release-plugin] prepare release biojava-7.1.4

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  committed
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