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lafitalafita
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Add and update CESymmParameters
1 parent aeb2344 commit f85b5b4

5 files changed

Lines changed: 914 additions & 873 deletions

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‎biojava-structure-gui/src/main/java/demo/DemoCeSymm.java‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -51,7 +51,7 @@ public static void main(String[] args)
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*/
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//Set the name of the protein structure to analyze
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String name = "1vym";
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String name = "1u6d";
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//Download the atoms
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AtomCache cache = new AtomCache();
@@ -63,9 +63,9 @@ public static void main(String[] args)
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//Choose some parameters
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CESymmParameters params = (CESymmParameters) ceSymm.getParameters();
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params.setRefineMethod(RefineMethod.SINGLE);
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params.setSymmetryType(SymmetryType.AUTO);
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params.setSymmType(SymmetryType.AUTO);
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params.setOptimization(true);
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params.setMultipleAxes(true);
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params.setSymmLevels(0);
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//Run the alignment
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MultipleAlignment symmetry = ceSymm.analyze(atoms, params);

‎biojava-structure/src/main/java/demo/DemoCeSymm.java‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -66,9 +66,9 @@ public static void main(String[] args)
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//Choose some parameters
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CESymmParameters params = (CESymmParameters) ceSymm.getParameters();
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params.setRefineMethod(RefineMethod.SINGLE);
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params.setSymmetryType(SymmetryType.AUTO);
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params.setSymmType(SymmetryType.AUTO);
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params.setOptimization(true);
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params.setMultipleAxes(true);
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params.setSymmLevels(0);
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//Run the alignment
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MultipleAlignment symmetry = ceSymm.analyze(atoms, params);

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