Fix bug with >3-level deep axes

sbliven · sbliven · commit eae3337edde7 · 2016-06-14T10:02:25.000+02:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/SymmetryAxes.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/SymmetryAxes.java
@@ -488,15 +488,15 @@ private void getSymmetryAxes(List<Axis> symmAxes, Matrix4d prior, int level, int
 		symmAxes.add(currAxis);
 		
 		//Remember that all degrees are at least 2
-		getSymmetryAxes(symmAxes,prior,level+1,0);
+		getSymmetryAxes(symmAxes,prior,level+1,firstRepeat,concat(priorCounts,0));
 		//New prior is elementary^d*prior
 		Matrix4d newPrior = new Matrix4d(elemOp);
 		newPrior.mul(prior);
 		int childSize = getNumRepeats(level+1);
-		getSymmetryAxes(symmAxes,newPrior,level+1,childSize);
+		getSymmetryAxes(symmAxes,newPrior,level+1,firstRepeat+childSize,concat(priorCounts,1));
 		for(int d=2;d<elem.getOrder();d++) {
 			newPrior.mul(elemOp,newPrior);
-			getSymmetryAxes(symmAxes,newPrior,level+1,childSize*d);
+			getSymmetryAxes(symmAxes,newPrior,level+1,firstRepeat+childSize*d,concat(priorCounts,d));
 		}
 	}
 	
