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biojava-structure/src/main/java/org/biojava/nbio/structure/asa/AsaCalculator.java

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@@ -37,17 +37,18 @@
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/**
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* Class to calculate Accessible Surface Areas based on
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* the rolling ball algorithm by Shrake and Rupley.
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*
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* <p>
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* The code is adapted from a python implementation at http://boscoh.com/protein/asapy
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* (now source is available at https://github.com/boscoh/asa).
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* Thanks to Bosco K. Ho for a great piece of code and for his fantastic blog.
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*
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* <p>
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* See
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* Shrake, A., and J. A. Rupley. "Environment and Exposure to Solvent of Protein Atoms.
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* Lysozyme and Insulin." JMB (1973) 79:351-371.
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* Lee, B., and Richards, F.M. "The interpretation of Protein Structures: Estimation of
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* Static Accessibility" JMB (1971) 55:379-400
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* @author duarte_j
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*
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* @author Jose Duarte
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*
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*/
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public class AsaCalculator {
@@ -396,7 +397,6 @@ int[][] findNeighborIndices() {
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* Returns the 2-dimensional array with neighbor indices for every atom,
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* using spatial hashing to avoid all to all distance calculation.
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* @return 2-dimensional array of size: n_atoms x n_neighbors_per_atom
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* @since 5.2.0
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*/
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int[][] findNeighborIndicesSpatialHashing() {
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