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Clean up
1 parent eca876a commit b3d6fba

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biojava-structure/src/main/java/org/biojava/nbio/structure/align/client/JFatCatClient.java

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@@ -74,28 +74,6 @@ public class JFatCatClient {
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}
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public static void main(String[] args) throws Exception {
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//System.out.println(hasPrecalculatedResult("http://source.rcsb.org/jfatcatserver/align/", "jCE Circular Permutation", "1CDG.A", "1TIM.A"));
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AtomCache cache = new AtomCache();
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String name1= "2W72.A";
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String name2= "1D2Z.D";
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Atom[] ca1 = cache.getAtoms(name1);
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Atom[] ca2 = cache.getAtoms(name2);
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int timeout = 10000;
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String testServer = "http://source.rcsb.org/jfatcatserver/align/";
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System.out.println(getAFPChainFromServer(testServer, FatCatRigid.algorithmName, name1, name2, ca1, ca2, timeout));
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PdbPairsMessage msg = getPdbPairs(testServer, 1, "test");
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System.out.println(msg);
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System.out.println(getRepresentatives(FarmJobParameters.DEFAULT_SERVER_URL, 40));
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}
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public static boolean hasPrecalculatedResult(String serverLocation, String method, String name1, String name2 ){
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return hasPrecalculatedResult(serverLocation, method, name1, name2, DEFAULT_TIMEOUT );
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}

biojava-structure/src/test/java/org/biojava/nbio/structure/align/ce/TestWebStartClient.java

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