bump to Java 11 ciftools release

sbittrich · sbittrich · commit b3221cfb5963 · 2020-08-11T10:39:05.000-07:00
diff --git a/biojava-structure/pom.xml b/biojava-structure/pom.xml
@@ -21,7 +21,7 @@
 		<dependency>
 			<groupId>org.rcsb</groupId>
 			<artifactId>ciftools-java</artifactId>
-			<version>0.10.1</version>
+			<version>2.0.2</version>
 		</dependency>
 		<dependency>
 			<groupId>org.rcsb</groupId>
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifFileConsumerImpl.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifFileConsumerImpl.java
@@ -903,8 +903,9 @@ public void consumeStructKeywords(StructKeywords structKeywords) {
         StrColumn pdbxKeywords = structKeywords.getPdbxKeywords();
         // TODO what is the correct format for these?
         if (pdbxKeywords.isDefined()) {
-            pdbHeader.setDescription(pdbxKeywords.values().collect(Collectors.joining(", ")));
-            pdbHeader.setClassification(pdbxKeywords.values().collect(Collectors.joining(", ")));
+            String keywords = pdbxKeywords.values().collect(Collectors.joining(", "));
+            pdbHeader.setDescription(keywords);
+            pdbHeader.setClassification(keywords);
         }
     }
 

Original file line number	Diff line number	Diff line change
`@@ -903,8 +903,9 @@ public void consumeStructKeywords(StructKeywords structKeywords) {`
`903`	`903`	`StrColumn pdbxKeywords = structKeywords.getPdbxKeywords();`
`904`	`904`	`// TODO what is the correct format for these?`
`905`	`905`	`if (pdbxKeywords.isDefined()) {`
`906`		`- pdbHeader.setDescription(pdbxKeywords.values().collect(Collectors.joining(", ")));`
`907`		`- pdbHeader.setClassification(pdbxKeywords.values().collect(Collectors.joining(", ")));`
	`906`	`+ String keywords = pdbxKeywords.values().collect(Collectors.joining(", "));`
	`907`	`+ pdbHeader.setDescription(keywords);`
	`908`	`+ pdbHeader.setClassification(keywords);`
`908`	`909`	`}`
`909`	`910`	`}`
`910`	`911`