biojava
diff --git a/‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/scop/RemoteScopInstallationTest.java‎
Lines changed: 0 additions & 64 deletions b/‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/scop/RemoteScopInstallationTest.java‎
Lines changed: 0 additions & 64 deletions
diff --git a/‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/scop/ScopFactoryTest.java‎
Lines changed: 0 additions & 6 deletions b/‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/scop/ScopFactoryTest.java‎
Lines changed: 0 additions & 6 deletions
diff --git a/‎biojava-structure/src/main/java/org/biojava/nbio/structure/align/util/AtomCache.java‎
Lines changed: 0 additions & 18 deletions b/‎biojava-structure/src/main/java/org/biojava/nbio/structure/align/util/AtomCache.java‎
Lines changed: 0 additions & 18 deletions
diff --git a/‎biojava-structure/src/main/java/org/biojava/nbio/structure/scop/CachedRemoteScopInstallation.java‎
Lines changed: 0 additions & 219 deletions b/‎biojava-structure/src/main/java/org/biojava/nbio/structure/scop/CachedRemoteScopInstallation.java‎
Lines changed: 0 additions & 219 deletions
@@ -21,7 +21,6 @@
 package org.biojava.nbio.structure.test.scop;
 
 import org.biojava.nbio.structure.scop.BerkeleyScopInstallation;
-import org.biojava.nbio.structure.scop.RemoteScopInstallation;
 import org.biojava.nbio.structure.scop.ScopDatabase;
 import org.biojava.nbio.structure.scop.ScopFactory;
 import org.junit.Before;
@@ -76,11 +75,6 @@ public void testVersions() {
 		scop = ScopFactory.getSCOP(ScopFactory.VERSION_1_75);
 		assertEquals(ScopFactory.VERSION_1_75, scop.getScopVersion());
 
-		ScopFactory.setScopDatabase(ScopFactory.VERSION_1_75, false);
-		scop = ScopFactory.getSCOP();
-		assertEquals(ScopFactory.VERSION_1_75, scop.getScopVersion());
-		assertSame( RemoteScopInstallation.class,scop.getClass());
-
 		ScopFactory.setScopDatabase(ScopFactory.VERSION_1_75, true);
 		scop = ScopFactory.getSCOP();
 		assertEquals(ScopFactory.VERSION_1_75, scop.getScopVersion());
 
@@ -42,7 +42,6 @@
 import org.biojava.nbio.core.util.FileDownloadUtils;
 import org.biojava.nbio.structure.quaternary.BiologicalAssemblyBuilder;
 import org.biojava.nbio.structure.quaternary.BiologicalAssemblyTransformation;
-import org.biojava.nbio.structure.scop.CachedRemoteScopInstallation;
 import org.biojava.nbio.structure.scop.ScopDatabase;
 import org.biojava.nbio.structure.scop.ScopDescription;
 import org.biojava.nbio.structure.scop.ScopDomain;
@@ -653,23 +652,6 @@ public Structure getStructureForDomain(String scopId, ScopDatabase scopDatabase)
 		return getStructureForDomain(domain, scopDatabase);
 	}
 
-	/**
-	 * Send a signal to the cache that the system is shutting down. Notifies underlying SerializableCache instances to
-	 * flush themselves...
-	 */
-	public void notifyShutdown() {
-
-		// todo: use a SCOP implementation that is backed by SerializableCache
-		ScopDatabase scopInstallation = ScopFactory.getSCOP();
-		if (scopInstallation != null) {
-			if (scopInstallation instanceof CachedRemoteScopInstallation) {
-				CachedRemoteScopInstallation cacheScop = (CachedRemoteScopInstallation) scopInstallation;
-				cacheScop.flushCache();
-			}
-		}
-
-	}
-
 	/**
 	 * set the location at which utility data should be cached.
 	 *