Factor out Subunits definition in quaternary symmetry

lafita · lafita · commit 8094a8eb5553 · 2015-07-23T17:10:07.000+02:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java
@@ -481,7 +481,12 @@ private static List<Integer> getFolds(Integer[] subCluster, int size) {
 		return denominators;
 	}
 	
-	private QuatSymmetryResults calcQuatSymmetry(Subunits subunits) {
+	private QuatSymmetryResults calcQuatSymmetry(Subunits subunits){
+		return calcQuatSymmetry(subunits, parameters);
+	}
+	
+	public static QuatSymmetryResults calcQuatSymmetry(Subunits subunits,
+			QuatSymmetryParameters parameters) {
 		if (subunits.getSubunitCount() == 0) {
 			return null;
 		}

Original file line number	Diff line number	Diff line change
`@@ -481,7 +481,12 @@ private static List<Integer> getFolds(Integer[] subCluster, int size) {`
`481`	`481`	`return denominators;`
`482`	`482`	`}`
`483`	`483`
`484`		`- private QuatSymmetryResults calcQuatSymmetry(Subunits subunits) {`
	`484`	`+ private QuatSymmetryResults calcQuatSymmetry(Subunits subunits){`
	`485`	`+ return calcQuatSymmetry(subunits, parameters);`
	`486`	`+ }`
	`487`	`+`
	`488`	`+ public static QuatSymmetryResults calcQuatSymmetry(Subunits subunits,`
	`489`	`+ QuatSymmetryParameters parameters) {`
`485`	`490`	`if (subunits.getSubunitCount() == 0) {`
`486`	`491`	`return null;`
`487`	`492`	`}`