another update to new similarity calculation

andreasprlic · andreasprlic · commit 7ca70e70bf93 · 2016-08-05T08:29:32.000-07:00
diff --git a/biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/TestSECalignment.java b/biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/TestSECalignment.java
@@ -77,12 +77,11 @@ public void testOldSecOutput() throws Exception {
 				28, afpChainOrig.getGapLen());
 
 		//identity should be 0.9569
-		assertTrue("alinment ID is < 0.95 ! (" + afpChainOrig.getIdentity()+")" , afpChainOrig.getIdentity() > 0.95);
-		assertTrue("alignment ID is > 0.96 ! (" + afpChainOrig.getIdentity()+")" ,afpChainOrig.getIdentity() < 0.96);
+		assertTrue("alignment ID is < 0.95 ! (" + afpChainOrig.getIdentity()+")" , afpChainOrig.getIdentity() > 0.95);
+		assertTrue("alignment ID is > 0.999 ! (" + afpChainOrig.getIdentity()+")" , afpChainOrig.getIdentity() < 0.999);
 
 		String xmlComp =  AFPChainXMLConverter.toXML(afpChainOrig, ca1, ca2);
 
-
 		FlipAFPChainTest t = new FlipAFPChainTest();
 		t.printFirstMismatch(xml, xmlComp);
 		StringManipulationTestsHelper.assertEqualsIgnoreEndline(xml, xmlComp);
