Add files via upload

jamesmorris · web-flow · commit 6acd1e975330 · 2019-04-16T12:27:34.000+01:00
Test genbank files for issue #833, these files all contain uppercase elements that would get successfully parsed by the legacy genbank parser but fail with the genbank parser in biojava 5
diff --git a/biojava-core/src/test/resources/uppercase_locus0.gb b/biojava-core/src/test/resources/uppercase_locus0.gb
@@ -0,0 +1,8 @@
+LOCUS       ABC12.3_DE   7071 BP DS-DNA   CIRCULAR  SYN       22-JUL-1994
+DEFINITION  -
+ACCESSION   -
+KEYWORDS    -
+SOURCE      -
+FEATURES             Location/Qualifiers
+ORIGIN
+//
diff --git a/biojava-core/src/test/resources/uppercase_locus1.gb b/biojava-core/src/test/resources/uppercase_locus1.gb
@@ -0,0 +1,8 @@
+LOCUS       ABC12.3_DE   7071 BP SS-DNA   CIRCULAR  SYN       13-JUL-1994
+DEFINITION  -
+ACCESSION   -
+KEYWORDS    -
+SOURCE      -
+FEATURES             Location/Qualifiers
+ORIGIN
+//
diff --git a/biojava-core/src/test/resources/uppercase_locus2.gb b/biojava-core/src/test/resources/uppercase_locus2.gb
@@ -0,0 +1 @@
+LOCUS       ABC12.3_DE   7071 BP MS-DNA   CIRCULAR  SYN       13-JUL-1994DEFINITION  -ACCESSION   -KEYWORDS    -SOURCE      -FEATURES             Location/QualifiersORIGIN//
diff --git a/biojava-core/src/test/resources/uppercase_locus3.gb b/biojava-core/src/test/resources/uppercase_locus3.gb
@@ -0,0 +1,6 @@
+LOCUS       ABC12.3_DE   7071 BP DNA   LINEAR    SYN       22-JUL-1994
+DEFINITION  -
+TITLE       -
+FEATURES             Location/Qualifiers
+ORIGIN      
+//
diff --git a/biojava-core/src/test/resources/uppercase_locus4.gb b/biojava-core/src/test/resources/uppercase_locus4.gb
@@ -0,0 +1,6 @@
+LOCUS       ABC12.3_DE   7071 BP DNA             SYN       13-JUL-1994
+DEFINITION  -
+TITLE       -
+FEATURES             Location/Qualifiers
+ORIGIN      
+//
diff --git a/biojava-core/src/test/resources/uppercase_locus5.gb b/biojava-core/src/test/resources/uppercase_locus5.gb
@@ -0,0 +1,8 @@
+LOCUS       ABC12.3_DE   7071 BP DNA
+DEFINITION  -
+ACCESSION   -
+KEYWORDS    -
+SOURCE      -
+FEATURES             Location/Qualifiers
+ORIGIN
+//
diff --git a/biojava-core/src/test/resources/uppercase_locus6.gb b/biojava-core/src/test/resources/uppercase_locus6.gb
@@ -0,0 +1,8 @@
+LOCUS       ABC12.3_DE   7071 BP
+DEFINITION  -
+ACCESSION   -
+KEYWORDS    -
+SOURCE      -
+FEATURES             Location/Qualifiers
+ORIGIN
+//
diff --git a/biojava-core/src/test/resources/uppercase_locus7.gb b/biojava-core/src/test/resources/uppercase_locus7.gb
@@ -0,0 +1 @@
+LOCUS       ABC12.3_DE   7071 AA ProteinDEFINITION  -ACCESSION   -KEYWORDS    -SOURCE      -FEATURES             Location/QualifiersORIGIN//

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1 @@`
	`1`	`+LOCUS ABC12.3_DE 7071 BP MS-DNA CIRCULAR SYN 13-JUL-1994DEFINITION -ACCESSION -KEYWORDS -SOURCE -FEATURES Location/QualifiersORIGIN//`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1 @@`
	`1`	`+LOCUS ABC12.3_DE 7071 AA ProteinDEFINITION -ACCESSION -KEYWORDS -SOURCE -FEATURES Location/QualifiersORIGIN//`