bactopia.github.io/developers/subworkflows at master · bactopia/bactopia.github.io

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Name		Name	Last commit message	Last commit date
parent directory ..
abricate.mdx		abricate.mdx
abritamr.mdx		abritamr.mdx
agrvate.mdx		agrvate.mdx
amrfinderplus.mdx		amrfinderplus.mdx
ariba.mdx		ariba.mdx
bactopia_assembler.mdx		bactopia_assembler.mdx
bactopia_datasets.mdx		bactopia_datasets.mdx
bactopia_gather.mdx		bactopia_gather.mdx
bactopia_qc.mdx		bactopia_qc.mdx
bactopia_sketcher.mdx		bactopia_sketcher.mdx
bakta.mdx		bakta.mdx
blastn.mdx		blastn.mdx
blastp.mdx		blastp.mdx
blastx.mdx		blastx.mdx
bracken.mdx		bracken.mdx
btyper3.mdx		btyper3.mdx
busco.mdx		busco.mdx
checkm.mdx		checkm.mdx
checkm2.mdx		checkm2.mdx
clermontyping.mdx		clermontyping.mdx
clonalframeml.mdx		clonalframeml.mdx
deacon.mdx		deacon.mdx
defensefinder.mdx		defensefinder.mdx
ectyper.mdx		ectyper.mdx
eggnog.mdx		eggnog.mdx
emmtyper.mdx		emmtyper.mdx
fastani.mdx		fastani.mdx
gamma.mdx		gamma.mdx
genomedl.mdx		genomedl.mdx
genotyphi.mdx		genotyphi.mdx
gigatyper.mdx		gigatyper.mdx
gtdb.mdx		gtdb.mdx
gubbins.mdx		gubbins.mdx
hicap.mdx		hicap.mdx
hpsuissero.mdx		hpsuissero.mdx
index.mdx		index.mdx
iqtree.mdx		iqtree.mdx
ismapper.mdx		ismapper.mdx
kleborate.mdx		kleborate.mdx
kraken2.mdx		kraken2.mdx
legsta.mdx		legsta.mdx
lissero.mdx		lissero.mdx
mashdist.mdx		mashdist.mdx
mashtree.mdx		mashtree.mdx
mcroni.mdx		mcroni.mdx
meningotype.mdx		meningotype.mdx
merlin.mdx		merlin.mdx
merlindist.mdx		merlindist.mdx
midas.mdx		midas.mdx
mlst.mdx		mlst.mdx
mobsuite.mdx		mobsuite.mdx
mykrobe.mdx		mykrobe.mdx
ncbigenomedownload.mdx		ncbigenomedownload.mdx
ngmaster.mdx		ngmaster.mdx
nohuman.mdx		nohuman.mdx
panaroo.mdx		panaroo.mdx
pangenome.mdx		pangenome.mdx
pasty.mdx		pasty.mdx
pbptyper.mdx		pbptyper.mdx
phispy.mdx		phispy.mdx
pirate.mdx		pirate.mdx
plasmidfinder.mdx		plasmidfinder.mdx
pneumocat.mdx		pneumocat.mdx
prokka.mdx		prokka.mdx
quast.mdx		quast.mdx
rgi.mdx		rgi.mdx
roary.mdx		roary.mdx
sccmec.mdx		sccmec.mdx
scoary.mdx		scoary.mdx
scrubber.mdx		scrubber.mdx
seqsero2.mdx		seqsero2.mdx
seroba.mdx		seroba.mdx
shigapass.mdx		shigapass.mdx
shigatyper.mdx		shigatyper.mdx
shigeifinder.mdx		shigeifinder.mdx
sistr.mdx		sistr.mdx
snippy_core.mdx		snippy_core.mdx
snippy_run.mdx		snippy_run.mdx
snpdists.mdx		snpdists.mdx
spatyper.mdx		spatyper.mdx
srahumanscrubber.mdx		srahumanscrubber.mdx
ssuissero.mdx		ssuissero.mdx
staphopiasccmec.mdx		staphopiasccmec.mdx
staphscan.mdx		staphscan.mdx
staphtyper.mdx		staphtyper.mdx
stecfinder.mdx		stecfinder.mdx
stxtyper.mdx		stxtyper.mdx
sylph.mdx		sylph.mdx
tblastn.mdx		tblastn.mdx
tblastx.mdx		tblastx.mdx
tbprofiler.mdx		tbprofiler.mdx
teton.mdx		teton.mdx
traitar.mdx		traitar.mdx

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