an1lam
diff --git a/‎src/in_silico_mutagenesis_bpnet_all_tfs.ipynb‎
Lines changed: 31 additions & 2 deletions b/‎src/in_silico_mutagenesis_bpnet_all_tfs.ipynb‎
Lines changed: 31 additions & 2 deletions
@@ -9,9 +9,37 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 1,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Using TensorFlow backend.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "WARNING:tensorflow:From /home/ubuntu/anaconda3/envs/deepmr-bpnet3/lib/python3.6/site-packages/keras/optimizers.py:790: The name tf.train.Optimizer is deprecated. Please use tf.compat.v1.train.Optimizer instead.\n",
+      "\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "2022-06-18 13:23:59,848 [WARNING] From /home/ubuntu/anaconda3/envs/deepmr-bpnet3/lib/python3.6/site-packages/keras/optimizers.py:790: The name tf.train.Optimizer is deprecated. Please use tf.compat.v1.train.Optimizer instead.\n",
+      "\n",
+      "2022-06-18 13:24:00,235 [INFO] NumExpr defaulting to 4 threads.\n",
+      "2022-06-18 13:24:01,757 [WARNING] Unrecognized fields for DataLoaderDescription: {'postprocessing'}. Available fields are {'type', 'dependencies', 'writers', 'defined_as', 'info', 'path', 'output_schema', 'args'}\n",
+      "2022-06-18 13:24:01,771 [WARNING] Unrecognized fields for DataLoaderDescription: {'postprocessing'}. Available fields are {'type', 'dependencies', 'writers', 'defined_as', 'info', 'path', 'output_schema', 'args'}\n",
+      "2022-06-18 13:24:01,808 [WARNING] Unrecognized fields for DataLoaderDescription: {'postprocessing'}. Available fields are {'type', 'dependencies', 'writers', 'defined_as', 'info', 'path', 'output_schema', 'args'}\n"
+     ]
+    }
+   ],
    "source": [
     "%load_ext autoreload\n",
     "%autoreload 2\n",
@@ -236,6 +264,7 @@
     "                           incl_chromosomes=gin_config['bpnet_data.valid_chr'], \n",
     "                           peak_width=gin_config['bpnet_data.peak_width'],\n",
     "                           seq_width=gin_config['bpnet_data.seq_width'],\n",
+    "                           inter\n",
     "                           shuffle=False)"
    ]
   },