forked from RcppCore/RcppEigen
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathNEWS.Rd
More file actions
317 lines (288 loc) · 11.9 KB
/
Copy pathNEWS.Rd
File metadata and controls
317 lines (288 loc) · 11.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
\name{NEWS}
\title{News for Package \pkg{RcppEigen}}
\newcommand{\ghpr}{\href{https://github.com/RcppCore/RcppEigen/pull/#1}{##1}}
\newcommand{\ghit}{\href{https://github.com/RcppCore/RcppEigen/issues/#1}{##1}}
\section{Changes in RcppEigen version 0.3.3.9.3 (2022-11-04)}{
\itemize{
\item The dependency on R is now versioned to 3.6.0 or later for
support for \code{USE_FC_LEN_T} from Fortran.
\item An old example typo was corrected (Jonah Gabry in \ghpr{114}).
\item The \code{fastLm} methods now reference \code{df.residual} by
its full name (Closes \ghit{115}).
\item A function prototype was updated for \code{clang-15}.
\item GitHub Actions were updated to checkout version 3.
}
}
\section{Changes in RcppEigen version 0.3.3.9.2 (2022-04-05)}{
\itemize{
\item Added test coverage in continuous integration
\item Added new tests to increase test coverage
\item Small improvement to the RcppEigen.package.skeleton() code
\item Small updates and edits to README.md and inst/CITATION
\item Use R_xlen_t for vector rows and columns (by Mikael Jagan)
\item Support USE_FC_LEN_T by adding FCONE to two dgesdd
}
}
\section{Changes in RcppEigen version 0.3.3.9.1 (2020-12-17)}{
\itemize{
\item Upgraded to Eigen 3.3.9 (Dirk in \ghpr{92} fixing \ghit{91}).
\item Added GitHub Actions CI using \code{run.sh} from r-ci (Dirk)
}
}
\section{Changes in RcppEigen version 0.3.3.7.0 (2019-11-16)}{
\itemize{
\item Fixed skeleton package creation listing RcppEigen under Imports
(James Balamuta in \ghpr{68} addressing \ghit{16}).
\item Small RNG use update to first example in skeleton package used
by package creation helper (Dirk addressing \ghit{69}).
\item Update vignette example to use RcppEigen:::eigen_version() (Dirk
addressing \ghit{71}).
\item Correct one RcppEigen.package.skeleton() corner case (Dirk in
\ghpr{77} fixing \ghit{75}).
\item Correct one usage case with \pkg{pkgKitten} (Dirk in \ghpr{78}).
\item The package now uses \pkg{tinytest} for unit tests (Dirk in
\ghpr{81}).
\item Upgraded to Eigen 3.3.7 (Dirk in \ghpr{82} fixing \ghit{80}).
}
}
\section{Changes in RcppEigen version 0.3.3.5.0 (2018-11-24)}{
\itemize{
\item Updated to version 3.3.5 of Eigen (Dirk in \ghpr{65})
\item Long vectors are now supported via \code{R_xlen_t} (Ralf
Stubner in \ghpr{55} fixing \ghit{54}).
\item The benchmarking example was updated in its use of
RcppArmadillo (Michael Weylandt in \ghpr{56}).
}
}
\section{Changes in RcppEigen version 0.3.3.4.0 (2018-02-05)}{
\itemize{
\item Updated to version 3.3.4 of Eigen (Yixuan in \ghpr{49})
\item Also carried over on new upstream (Yixuan, addressing
\ghit{48})
\item As before, condition \code{long long} use on C++11.
\item Pragmas for g++ & clang to suppress diagnostics messages are
disabled per CRAN Policy; use \code{-Wno-ignored-attributes} to quieten.
}
}
\section{Changes in RcppEigen version 0.3.3.3.1 (2017-11-19)}{
\itemize{
\item Compilation under Haiku-OS is now supported (Yu Gong in
\ghpr{45}).
\item The \code{Rcpp.plugin.maker} helper function is called via
\code{::} as it is in fact exported (yet we had old code using
\code{:::}).
\item A spurious argument was removed from an example call.
\item Travis CI now uses https to fetch the test runner script.
}
}
\section{Changes in RcppEigen version 0.3.3.3.0 (2017-04-29)}{
\itemize{
\item Updated to version 3.3.3 of Eigen
\item Fixed incorrect function names in the examples, thanks to
ChingChuan Chen
\item The class \code{MappedSparseMatrix<T>} has been deprecated since
Eigen 3.3.0. The new structure \code{Map<SparseMatrix<T> >} should be used
instead
\item Exporters for the new type \code{Map<SparseMatrix<T> >} were added
\item Travis CI is now driven via \code{run.sh} from our forked r-travis
}
}
\section{Changes in RcppEigen version 0.3.2.9.1 (2017-03-14)}{
\itemize{
\item Synchronize CholMod header file with Matrix package to ensure
binary compatibility on all platforms (Martin Maechler in \ghpr{42})
\item Added file \code{init.c} with calls to \code{R_registerRoutines()}
\code{and R_useDynamicSymbols()}; also use \code{.registration=TRUE}
in \code{useDynLib} in \code{NAMESPACE}
}
}
\section{Changes in RcppEigen version 0.3.2.9.0 (2016-08-20)}{
\itemize{
\item Updated to version 3.2.9 of Eigen (PR \ghpr{37} by Yixuan
closing \ghit{36} from Bob Carpenter of the Stan team)
\item An exporter for \code{RowVectorX} was added (thanks to PR \ghpr{32}
by James Balamuta)
}
}
\section{Changes in RcppEigen version 0.3.2.8.1 (2016-02-29)}{
\itemize{
\item Applied another upstream UBSAN fix (PR \ghpr{30} by Yixuan)
}
}
\section{Changes in RcppEigen version 0.3.2.8.0 (2016-02-23)}{
\itemize{
\item Updated to version 3.2.8 of Eigen (PR \ghpr{29} by Yixuan)
}
}
\section{Changes in RcppEigen version 0.3.2.7.0 (2016-01-18)}{
\itemize{
\item Updated to version 3.2.7 of Eigen
\item One unit test file tightened to please R-devel CMD check
\item The fastLm example will not include the Lapack header if MKL
is defined (thanks to PR \ghpr{25} by Alexey Stukalow)
}
}
\section{Changes in RcppEigen version 0.3.2.5.1 (2015-09-23)}{
\itemize{
\item Corrected use of \code{kitten()} thanks to Grant Brown (#21)
\item Applied upstream change to protect against undefined behaviour
with null pointers
}
}
\section{Changes in RcppEigen version 0.3.2.5.0 (2015-07-11)}{
\itemize{
\item Updated to version 3.2.5 of Eigen
\item Fixed some incorrect error messages stemming from Eigen code.
\item Updated package to current \code{R CMD check} standards.
}
}
\section{Changes in RcppEigen version 0.3.2.4.0 (2015-02-23)}{
\itemize{
\item Updated to version 3.2.4 of Eigen
\item Update \code{RcppEigen.package.skeleton()} to use
\CRANpkg{pkgKitten} if available
}
}
\section{Changes in RcppEigen version 0.3.2.3.0 (2014-12-22)}{
\itemize{
\item Updated to version 3.2.3 of Eigen
\item Added a number of additional unit tests for \code{wrap},
\code{transform} and \code{sparse}
\item Updated one of the examples
}
}
\section{Changes in RcppEigen version 0.3.2.2.0 (2014-08-19)}{
\itemize{
\item Updated to version 3.2.2 of Eigen
\item \code{Rcpp::as()} now supports the conversion from R vector to
\dQuote{row array}, i.e., \code{Eigen::Array<T, 1, Eigen::Dynamic>}
\item \code{Rcpp::as()} now supports the conversion from
\code{dgRMatrix} (row oriented sparse matrices, defined in
\pkg{Matrix} package) to
\code{Eigen::MappedSparseMatrix<T, Eigen::RowMajor>}
\item Conversion from R matrix to \code{Eigen::MatrixXd} and
\code{Eigen::ArrayXXd} using \code{Rcpp::as()} no longer gives
compilation errors
}
}
\section{Changes in RcppEigen version 0.3.2.1.2 (2014-05-05)}{
\itemize{
\item Applied upstream patch to not trigger g++ UBSAN warning on
the cpu id comparison, with thanks to Gael Guennebaud for the patch
}
}
\section{Changes in RcppEigen version 0.3.2.1.1 (2014-03-06)}{
\itemize{
\item Better \code{ifdef} on one directory entry feature, with
thanks to Brian Ripley.
}
}
\section{Changes in RcppEigen version 0.3.2.1.0 (2014-03-03)}{
\itemize{
\item Updated to version 3.2.1 of Eigen
}
}
\section{Changes in RcppEigen version 0.3.2.0.3 (2014-03-01)}{
\itemize{
\item Updated and extended \code{RcppEigen.package.skeleton()} to
use several examples via \CRANpkg{Rcpp} Attributes; also removed the
deprecated \code{namespace} argument
\item Updated skeleton package example for \CRANpkg{Rcpp} 0.11.0 or
later by removing needed for linking with user library
\item Updated files \code{DESCRIPTION}, \code{NAMESPACE},
\code{src/Makevars} and \code{src/Makevars.win} similarly
}
}
\section{Changes in RcppEigen version 0.3.2.0.2 (2014-01-26)}{
\itemize{
\item Converted three unused unit test files to \CRANpkg{RUnit} and
removed \code{Suggests:} of \CRANpkg{testthat}
\item Add declaration to import a symbol from \CRANpkg{Rcpp} to
\code{NAMESPACE} to ensure proper instantiation with the upcoming
\CRANpkg{Rcpp} version
\item Retire \code{SHLIB.maker} function
}
}
\section{Changes in RcppEigen version 0.3.2.0.1 (2013-12-18)}{
\itemize{
\item New maintainer -- with a big thanks to Doug for all his work
\item Applied two small patches to deal with non-g++ compilrs
\item Clarifications concerning license and authorship of
Eigen (as opposed to RcppEigen) code added to \code{DESCRIPTION} at
the request of CRAN
}
}
\section{Changes in RcppEigen version 0.3.2.0 (2013-11-13)}{
\itemize{
\item Update to version 3.2.0 of Eigen
}
}
\section{Changes in RcppEigen version 0.3.1.2.3 (2013-10-25)}{
\itemize{
\item Fix to RcppEigenCholmod.h to incorporate changes in the
cholmod_factor struct. These changes are necessary if code
compiled against RcppEigen that uses CHOLMOD factors is to be run
with versions of the Matrix package >= 1.1-0
}
}
\section{Changes in RcppEigen version 0.3.1.2 (2012-11-29)}{
\itemize{
\item Upgraded to Eigen 3.1.2
\item Fixes to RcppEigenWrap.h and adjustment of tests accordingly.
The changes allow RowMajor matrices to be wrapped (thanks to Gael
Guennebaud) but cannot handle RowVector types. There will need to be
more template metaprogramming done to redirect the case of RowVector,
which cannot be changed to a ColMajor form.
\item Because of changes in R, -DNDEBUG is automatic. One must
override it with -UNDEBUG in the local ~/.R/Makevars to activate the
debugging code.
\item New (unexported) functions CxxFlags() and RcppEigenCxxFlags()
for use in Makefiles
\item Fixes related to Rcpp 0.10.*
}
}
\section{Changes in RcppEigen version 0.3.1 (2012-08-07)}{
\itemize{
\item Upgraded to Eigen 3.1.0
\item Removed the "unsupported" Eigen module AutoDiff which defined a
macro "sign" that conflicted with a function in the R API (which
really should be visible as "Rf_sign", not sure why it shows up as
"sign" and don't have time to investigate)
\item Commented out several tests involving complex vectors and
matrices. Again there are compilation problems related to
conflicting definitions in the std:: namespace and the R API and
Eigen, which I don't have time to investigate.
}
}
\section{Changes in RcppEigen version 0.2.0 (2012-03-12)}{
\itemize{
\item Upgraded the version of Eigen to 3.1.0-alpha2, in which the sparse
matrix modules are now in the "supported" tree.
\item Added several "unsupported" Eigen modules including
\itemize{
\item AutoDiff (a small automatic differentiation package adapted to
vectors and matrices)
\item IterativeSolvers (iterative linear and nonlinear solver algorithms)
\item KroneckerProduct (as the name implies)
\item MatrixFunctions (matrix cos, exp, log, sin, sinh, etc.)
\item NonlinearOptimization (based on minpack but uses reverse
communication - yay!)
\item NumericalDiff (numerical differentiation of vector-valued or
matrix-valued functions)
\item Polynomials (polynomial representation and solution using a QR
algorithm)
\item Skyline (sparse skyline matrices useful in finite-element codes)
\item SparseExtra (dynamic sparse matrices, now deprecated, and Matrix
Market I/O functions)
\item Splines (multidimensional spline representations and spline
interpolation)
}
\item At present all these modules, including the MatrixFunctions
module, are included with RcppEigen.h but that may change if too
many people get unexpected results from A.exp()
\item The ability to wrap RowMajor sparse matrices and to use
as<Eigen::ArrayXd> etc.
\item Migrated some tests to the testthat package. Currently there is
some difficulty with combining testthat, inline and R CMD check.
}
}