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Refactor scripts starting with "S" character
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save_pdb_with_anisou.py renamed to scripts/save_pdb_with_anisou.py

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save_settings.py renamed to scripts/save_settings.py

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select_sites.py renamed to scripts/select_sites.py

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show_bumps.py renamed to scripts/show_bumps.py

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spectrum_states.py renamed to scripts/spectrum_states.py

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spectrumany.py renamed to scripts/spectrumany.py

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stereo_ray.py renamed to scripts/stereo_ray.py

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