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// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.
#include "arrow/dataset/file_csv.h"
#include <algorithm>
#include <memory>
#include <sstream>
#include <string>
#include <unordered_set>
#include <utility>
#include "arrow/csv/options.h"
#include "arrow/csv/parser.h"
#include "arrow/csv/reader.h"
#include "arrow/csv/writer.h"
#include "arrow/dataset/dataset_internal.h"
#include "arrow/dataset/file_base.h"
#include "arrow/dataset/type_fwd.h"
#include "arrow/dataset/visibility.h"
#include "arrow/io/buffered.h"
#include "arrow/io/compressed.h"
#include "arrow/ipc/writer.h"
#include "arrow/result.h"
#include "arrow/type.h"
#include "arrow/util/async_generator.h"
#include "arrow/util/bit_util.h"
#include "arrow/util/iterator.h"
#include "arrow/util/logging.h"
#include "arrow/util/tracing_internal.h"
#include "arrow/util/utf8.h"
namespace arrow {
using internal::checked_cast;
using internal::checked_pointer_cast;
using internal::Executor;
using internal::SerialExecutor;
namespace dataset {
struct CsvInspectedFragment : public InspectedFragment {
CsvInspectedFragment(std::vector<std::string> column_names,
std::shared_ptr<io::InputStream> input_stream, int64_t num_bytes)
: InspectedFragment(std::move(column_names)),
input_stream(std::move(input_stream)),
num_bytes(num_bytes) {}
// We need to start reading the file in order to figure out the column names and
// so we save off the input stream
std::shared_ptr<io::InputStream> input_stream;
int64_t num_bytes;
};
class CsvFileScanner : public FragmentScanner {
public:
CsvFileScanner(std::shared_ptr<csv::StreamingReader> reader, int num_batches,
int64_t best_guess_bytes_per_batch)
: reader_(std::move(reader)),
num_batches_(num_batches),
best_guess_bytes_per_batch_(best_guess_bytes_per_batch) {}
Future<std::shared_ptr<RecordBatch>> ScanBatch(int batch_number) override {
// This should be called in increasing order but let's verify that in case it changes.
// It would be easy enough to handle out of order but no need for that complexity at
// the moment.
DCHECK_EQ(scanned_so_far_++, batch_number);
return reader_->ReadNextAsync();
}
int64_t EstimatedDataBytes(int batch_number) override {
return best_guess_bytes_per_batch_;
}
int NumBatches() override { return num_batches_; }
static Result<csv::ConvertOptions> GetConvertOptions(
const CsvFragmentScanOptions& csv_options, const FragmentScanRequest& scan_request,
const CsvInspectedFragment& inspected_fragment) {
// We use the convert options given from the user but override which columns we are
// looking for.
auto convert_options = csv_options.convert_options;
std::vector<std::string> columns;
std::unordered_map<std::string, std::shared_ptr<DataType>> column_types;
for (const auto& scan_column : scan_request.columns) {
if (scan_column.path.indices().size() != 1) {
return Status::Invalid("CSV reader does not supported nested references");
}
const std::string& column_name =
inspected_fragment.column_names[scan_column.path.indices()[0]];
columns.push_back(column_name);
column_types[column_name] = scan_column.requested_type->GetSharedPtr();
}
convert_options.include_columns = std::move(columns);
convert_options.column_types = std::move(column_types);
return std::move(convert_options);
}
static Future<std::shared_ptr<FragmentScanner>> Make(
const CsvFragmentScanOptions& csv_options, const FragmentScanRequest& scan_request,
const CsvInspectedFragment& inspected_fragment, Executor* cpu_executor) {
auto read_options = csv_options.read_options;
int num_batches = static_cast<int>(bit_util::CeilDiv(
inspected_fragment.num_bytes, static_cast<int64_t>(read_options.block_size)));
// Could be better, but a reasonable starting point. CSV presumably takes up more
// space than an in-memory format so this should be conservative.
int64_t best_guess_bytes_per_batch = read_options.block_size;
ARROW_ASSIGN_OR_RAISE(
csv::ConvertOptions convert_options,
GetConvertOptions(csv_options, scan_request, inspected_fragment));
return csv::StreamingReader::MakeAsync(
io::default_io_context(), inspected_fragment.input_stream, cpu_executor,
read_options, csv_options.parse_options, convert_options)
.Then([num_batches, best_guess_bytes_per_batch](
const std::shared_ptr<csv::StreamingReader>& reader)
-> std::shared_ptr<FragmentScanner> {
return std::make_shared<CsvFileScanner>(reader, num_batches,
best_guess_bytes_per_batch);
});
}
private:
std::shared_ptr<csv::StreamingReader> reader_;
int num_batches_;
int64_t best_guess_bytes_per_batch_;
int scanned_so_far_ = 0;
};
using RecordBatchGenerator = std::function<Future<std::shared_ptr<RecordBatch>>()>;
Result<std::vector<std::string>> GetOrderedColumnNames(
const csv::ReadOptions& read_options, const csv::ParseOptions& parse_options,
std::string_view first_block, MemoryPool* pool) {
// Skip BOM when reading column names (ARROW-14644, ARROW-17382)
auto size = first_block.length();
const uint8_t* data = reinterpret_cast<const uint8_t*>(first_block.data());
ARROW_ASSIGN_OR_RAISE(auto data_no_bom, util::SkipUTF8BOM(data, size));
size = size - static_cast<uint32_t>(data_no_bom - data);
first_block = std::string_view(reinterpret_cast<const char*>(data_no_bom), size);
if (!read_options.column_names.empty()) {
return read_options.column_names;
}
uint32_t parsed_size = 0;
int32_t max_num_rows = read_options.skip_rows + 1;
csv::BlockParser parser(pool, parse_options, /*num_cols=*/-1, /*first_row=*/1,
max_num_rows);
RETURN_NOT_OK(parser.Parse(std::string_view{first_block}, &parsed_size));
if (parser.num_rows() != max_num_rows) {
return Status::Invalid("Could not read first ", max_num_rows,
" rows from CSV file, either file is truncated or"
" header is larger than block size");
}
if (parser.num_cols() == 0) {
return Status::Invalid("No columns in CSV file");
}
std::vector<std::string> column_names;
if (read_options.autogenerate_column_names) {
column_names.reserve(parser.num_cols());
for (int32_t i = 0; i < parser.num_cols(); ++i) {
std::stringstream ss;
ss << "f" << i;
column_names.emplace_back(ss.str());
}
return column_names;
}
RETURN_NOT_OK(
parser.VisitLastRow([&](const uint8_t* data, uint32_t size, bool quoted) -> Status {
std::string_view view{reinterpret_cast<const char*>(data), size};
column_names.emplace_back(view);
return Status::OK();
}));
return column_names;
}
Result<std::unordered_set<std::string>> GetColumnNames(
const csv::ReadOptions& read_options, const csv::ParseOptions& parse_options,
std::string_view first_block, MemoryPool* pool) {
ARROW_ASSIGN_OR_RAISE(
std::vector<std::string> ordered_names,
GetOrderedColumnNames(read_options, parse_options, first_block, pool));
std::unordered_set<std::string> unordered_names;
for (const auto& column : ordered_names) {
if (!unordered_names.emplace(column).second) {
return Status::Invalid("CSV file contained multiple columns named ", column);
}
}
return unordered_names;
}
static inline Result<csv::ConvertOptions> GetConvertOptions(
const CsvFileFormat& format, const ScanOptions* scan_options,
const std::string_view first_block) {
ARROW_ASSIGN_OR_RAISE(
auto csv_scan_options,
GetFragmentScanOptions<CsvFragmentScanOptions>(
kCsvTypeName, scan_options, format.default_fragment_scan_options));
ARROW_ASSIGN_OR_RAISE(
auto column_names,
GetColumnNames(csv_scan_options->read_options, format.parse_options, first_block,
scan_options ? scan_options->pool : default_memory_pool()));
auto convert_options = csv_scan_options->convert_options;
if (!scan_options) return convert_options;
auto field_refs = scan_options->MaterializedFields();
std::unordered_set<std::string> materialized_fields;
materialized_fields.reserve(field_refs.size());
// Preprocess field refs. We try to avoid FieldRef::GetFoo here since that's
// quadratic (and this is significant overhead with 1000+ columns)
for (const auto& ref : field_refs) {
if (const std::string* name = ref.name()) {
// Common case
materialized_fields.emplace(*name);
continue;
}
// Currently CSV reader doesn't support reading any nested types, so this
// path shouldn't be hit. However, implement it in the same way as IPC/ORC:
// load the entire top-level field if a nested field is selected.
ARROW_ASSIGN_OR_RAISE(auto field, ref.GetOneOrNone(*scan_options->dataset_schema));
if (column_names.find(field->name()) == column_names.end()) continue;
// Only read the requested columns
convert_options.include_columns.push_back(field->name());
// Properly set conversion types
convert_options.column_types[field->name()] = field->type();
}
for (auto field : scan_options->dataset_schema->fields()) {
if (materialized_fields.find(field->name()) == materialized_fields.end()) continue;
// Ignore virtual columns.
if (column_names.find(field->name()) == column_names.end()) continue;
// Only read the requested columns
convert_options.include_columns.push_back(field->name());
// Properly set conversion types
convert_options.column_types[field->name()] = field->type();
}
return convert_options;
}
static inline Result<csv::ReadOptions> GetReadOptions(
const CsvFileFormat& format, const std::shared_ptr<ScanOptions>& scan_options) {
ARROW_ASSIGN_OR_RAISE(
auto csv_scan_options,
GetFragmentScanOptions<CsvFragmentScanOptions>(
kCsvTypeName, scan_options.get(), format.default_fragment_scan_options));
auto read_options = csv_scan_options->read_options;
// Multithreaded conversion of individual files would lead to excessive thread
// contention when ScanTasks are also executed in multiple threads, so we disable it
// here. Also, this is a no-op since the streaming CSV reader is currently serial
read_options.use_threads = false;
return read_options;
}
static inline Future<std::shared_ptr<csv::StreamingReader>> OpenReaderAsync(
const FileSource& source, const CsvFileFormat& format,
const std::shared_ptr<ScanOptions>& scan_options, Executor* cpu_executor) {
#ifdef ARROW_WITH_OPENTELEMETRY
auto tracer = arrow::internal::tracing::GetTracer();
auto span = tracer->StartSpan("arrow::dataset::CsvFileFormat::OpenReaderAsync");
#endif
ARROW_ASSIGN_OR_RAISE(
auto fragment_scan_options,
GetFragmentScanOptions<CsvFragmentScanOptions>(
kCsvTypeName, scan_options.get(), format.default_fragment_scan_options));
ARROW_ASSIGN_OR_RAISE(auto reader_options, GetReadOptions(format, scan_options));
ARROW_ASSIGN_OR_RAISE(auto input, source.OpenCompressed());
if (fragment_scan_options->stream_transform_func) {
ARROW_ASSIGN_OR_RAISE(input, fragment_scan_options->stream_transform_func(input));
}
const auto& path = source.path();
ARROW_ASSIGN_OR_RAISE(
input, io::BufferedInputStream::Create(reader_options.block_size,
default_memory_pool(), std::move(input)));
// Grab the first block and use it to determine the schema and create a reader. The
// input->Peek call blocks so we run the whole thing on the I/O thread pool.
auto reader_fut = DeferNotOk(input->io_context().executor()->Submit(
[=]() -> Future<std::shared_ptr<csv::StreamingReader>> {
ARROW_ASSIGN_OR_RAISE(auto first_block, input->Peek(reader_options.block_size));
const auto& parse_options = format.parse_options;
ARROW_ASSIGN_OR_RAISE(
auto convert_options,
GetConvertOptions(format, scan_options ? scan_options.get() : nullptr,
first_block));
return csv::StreamingReader::MakeAsync(io::default_io_context(), std::move(input),
cpu_executor, reader_options,
parse_options, convert_options);
}));
return reader_fut.Then(
// Adds the filename to the error
[=](const std::shared_ptr<csv::StreamingReader>& reader)
-> Result<std::shared_ptr<csv::StreamingReader>> {
#ifdef ARROW_WITH_OPENTELEMETRY
span->SetStatus(opentelemetry::trace::StatusCode::kOk);
span->End();
#endif
return reader;
},
[=](const Status& err) -> Result<std::shared_ptr<csv::StreamingReader>> {
#ifdef ARROW_WITH_OPENTELEMETRY
arrow::internal::tracing::MarkSpan(err, span.get());
span->End();
#endif
return err.WithMessage("Could not open CSV input source '", path, "': ", err);
});
}
static inline Result<std::shared_ptr<csv::StreamingReader>> OpenReader(
const FileSource& source, const CsvFileFormat& format,
const std::shared_ptr<ScanOptions>& scan_options = nullptr) {
auto open_reader_fut = OpenReaderAsync(source, format, scan_options,
::arrow::internal::GetCpuThreadPool());
return open_reader_fut.result();
}
static RecordBatchGenerator GeneratorFromReader(
const Future<std::shared_ptr<csv::StreamingReader>>& reader, int64_t batch_size) {
auto gen_fut = reader.Then(
[batch_size](
const std::shared_ptr<csv::StreamingReader>& reader) -> RecordBatchGenerator {
auto batch_gen = [reader]() { return reader->ReadNextAsync(); };
return MakeChunkedBatchGenerator(std::move(batch_gen), batch_size);
});
return MakeFromFuture(std::move(gen_fut));
}
CsvFileFormat::CsvFileFormat() : FileFormat(std::make_shared<CsvFragmentScanOptions>()) {}
bool CsvFileFormat::Equals(const FileFormat& format) const {
if (type_name() != format.type_name()) return false;
const auto& other_parse_options =
checked_cast<const CsvFileFormat&>(format).parse_options;
return parse_options.delimiter == other_parse_options.delimiter &&
parse_options.quoting == other_parse_options.quoting &&
parse_options.quote_char == other_parse_options.quote_char &&
parse_options.double_quote == other_parse_options.double_quote &&
parse_options.escaping == other_parse_options.escaping &&
parse_options.escape_char == other_parse_options.escape_char &&
parse_options.newlines_in_values == other_parse_options.newlines_in_values &&
parse_options.ignore_empty_lines == other_parse_options.ignore_empty_lines;
}
Result<bool> CsvFileFormat::IsSupported(const FileSource& source) const {
RETURN_NOT_OK(source.Open().status());
return OpenReader(source, *this).ok();
}
Result<std::shared_ptr<Schema>> CsvFileFormat::Inspect(const FileSource& source) const {
ARROW_ASSIGN_OR_RAISE(auto reader, OpenReader(source, *this));
return reader->schema();
}
Result<RecordBatchGenerator> CsvFileFormat::ScanBatchesAsync(
const std::shared_ptr<ScanOptions>& scan_options,
const std::shared_ptr<FileFragment>& file) const {
auto this_ = checked_pointer_cast<const CsvFileFormat>(shared_from_this());
auto source = file->source();
auto reader_fut =
OpenReaderAsync(source, *this, scan_options, ::arrow::internal::GetCpuThreadPool());
auto generator = GeneratorFromReader(std::move(reader_fut), scan_options->batch_size);
WRAP_ASYNC_GENERATOR_WITH_CHILD_SPAN(
generator, "arrow::dataset::CsvFileFormat::ScanBatchesAsync::Next");
return generator;
}
Future<std::optional<int64_t>> CsvFileFormat::CountRows(
const std::shared_ptr<FileFragment>& file, compute::Expression predicate,
const std::shared_ptr<ScanOptions>& options) {
if (ExpressionHasFieldRefs(predicate)) {
return Future<std::optional<int64_t>>::MakeFinished(std::nullopt);
}
auto self = checked_pointer_cast<CsvFileFormat>(shared_from_this());
ARROW_ASSIGN_OR_RAISE(
auto fragment_scan_options,
GetFragmentScanOptions<CsvFragmentScanOptions>(
kCsvTypeName, options.get(), self->default_fragment_scan_options));
ARROW_ASSIGN_OR_RAISE(auto read_options, GetReadOptions(*self, options));
ARROW_ASSIGN_OR_RAISE(auto input, file->source().OpenCompressed());
if (fragment_scan_options->stream_transform_func) {
ARROW_ASSIGN_OR_RAISE(input, fragment_scan_options->stream_transform_func(input));
}
return csv::CountRowsAsync(options->io_context, std::move(input),
::arrow::internal::GetCpuThreadPool(), read_options,
self->parse_options)
.Then([](int64_t count) { return std::make_optional<int64_t>(count); });
}
Future<std::shared_ptr<FragmentScanner>> CsvFileFormat::BeginScan(
const FragmentScanRequest& request, const InspectedFragment& inspected_fragment,
const FragmentScanOptions* format_options, compute::ExecContext* exec_context) const {
auto csv_options = static_cast<const CsvFragmentScanOptions*>(format_options);
auto csv_fragment = static_cast<const CsvInspectedFragment&>(inspected_fragment);
return CsvFileScanner::Make(*csv_options, request, csv_fragment,
exec_context->executor());
}
Result<std::shared_ptr<InspectedFragment>> DoInspectFragment(
const FileSource& source, const CsvFragmentScanOptions& csv_options,
compute::ExecContext* exec_context) {
ARROW_ASSIGN_OR_RAISE(auto input, source.OpenCompressed());
if (csv_options.stream_transform_func) {
ARROW_ASSIGN_OR_RAISE(input, csv_options.stream_transform_func(input));
}
ARROW_ASSIGN_OR_RAISE(
input, io::BufferedInputStream::Create(csv_options.read_options.block_size,
default_memory_pool(), std::move(input)));
ARROW_ASSIGN_OR_RAISE(std::string_view first_block,
input->Peek(csv_options.read_options.block_size));
ARROW_ASSIGN_OR_RAISE(
std::vector<std::string> column_names,
GetOrderedColumnNames(csv_options.read_options, csv_options.parse_options,
first_block, exec_context->memory_pool()));
return std::make_shared<CsvInspectedFragment>(std::move(column_names), std::move(input),
source.Size());
}
Future<std::shared_ptr<InspectedFragment>> CsvFileFormat::InspectFragment(
const FileSource& source, const FragmentScanOptions* format_options,
compute::ExecContext* exec_context) const {
auto csv_options = static_cast<const CsvFragmentScanOptions*>(format_options);
Executor* io_executor;
if (source.filesystem()) {
io_executor = source.filesystem()->io_context().executor();
} else {
io_executor = exec_context->executor();
}
return DeferNotOk(io_executor->Submit([source, csv_options, exec_context]() {
return DoInspectFragment(source, *csv_options, exec_context);
}));
}
//
// CsvFileWriter, CsvFileWriteOptions
//
std::shared_ptr<FileWriteOptions> CsvFileFormat::DefaultWriteOptions() {
std::shared_ptr<CsvFileWriteOptions> csv_options(
new CsvFileWriteOptions(shared_from_this()));
csv_options->write_options =
std::make_shared<csv::WriteOptions>(csv::WriteOptions::Defaults());
return csv_options;
}
Result<std::shared_ptr<FileWriter>> CsvFileFormat::MakeWriter(
std::shared_ptr<io::OutputStream> destination, std::shared_ptr<Schema> schema,
std::shared_ptr<FileWriteOptions> options,
fs::FileLocator destination_locator) const {
if (!Equals(*options->format())) {
return Status::TypeError("Mismatching format/write options.");
}
auto csv_options = checked_pointer_cast<CsvFileWriteOptions>(options);
ARROW_ASSIGN_OR_RAISE(
auto writer, csv::MakeCSVWriter(destination, schema, *csv_options->write_options));
return std::shared_ptr<FileWriter>(
new CsvFileWriter(std::move(destination), std::move(writer), std::move(schema),
std::move(csv_options), std::move(destination_locator)));
}
CsvFileWriter::CsvFileWriter(std::shared_ptr<io::OutputStream> destination,
std::shared_ptr<ipc::RecordBatchWriter> writer,
std::shared_ptr<Schema> schema,
std::shared_ptr<CsvFileWriteOptions> options,
fs::FileLocator destination_locator)
: FileWriter(std::move(schema), std::move(options), std::move(destination),
std::move(destination_locator)),
batch_writer_(std::move(writer)) {}
Status CsvFileWriter::Write(const std::shared_ptr<RecordBatch>& batch) {
return batch_writer_->WriteRecordBatch(*batch);
}
Future<> CsvFileWriter::FinishInternal() {
// The CSV writer's Close() is a no-op, so just treat it as synchronous
RETURN_NOT_OK(batch_writer_->Close());
return Status::OK();
}
} // namespace dataset
} // namespace arrow