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// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.
#include "arrow/array/concatenate.h"
#include <algorithm>
#include <cstddef>
#include <cstdint>
#include <limits>
#include <memory>
#include <utility>
#include <vector>
#include "arrow/array.h"
#include "arrow/array/builder_primitive.h"
#include "arrow/array/data.h"
#include "arrow/array/util.h"
#include "arrow/buffer.h"
#include "arrow/result.h"
#include "arrow/status.h"
#include "arrow/type.h"
#include "arrow/type_fwd.h"
#include "arrow/util/bit_run_reader.h"
#include "arrow/util/bit_util.h"
#include "arrow/util/bitmap_ops.h"
#include "arrow/util/checked_cast.h"
#include "arrow/util/int_util.h"
#include "arrow/util/int_util_overflow.h"
#include "arrow/util/logging.h"
#include "arrow/visit_type_inline.h"
namespace arrow {
using internal::SafeSignedAdd;
namespace {
/// offset, length pair for representing a Range of a buffer or array
struct Range {
int64_t offset = -1, length = 0;
Range() = default;
Range(int64_t o, int64_t l) : offset(o), length(l) {}
};
/// non-owning view into a range of bits
struct Bitmap {
Bitmap() = default;
Bitmap(const uint8_t* d, Range r) : data(d), range(r) {}
explicit Bitmap(const std::shared_ptr<Buffer>& buffer, Range r)
: Bitmap(buffer ? buffer->data() : nullptr, r) {}
const uint8_t* data = nullptr;
Range range;
bool AllSet() const { return data == nullptr; }
};
// Allocate a buffer and concatenate bitmaps into it.
Status ConcatenateBitmaps(const std::vector<Bitmap>& bitmaps, MemoryPool* pool,
std::shared_ptr<Buffer>* out) {
int64_t out_length = 0;
for (const auto& bitmap : bitmaps) {
if (internal::AddWithOverflow(out_length, bitmap.range.length, &out_length)) {
return Status::Invalid("Length overflow when concatenating arrays");
}
}
ARROW_ASSIGN_OR_RAISE(*out, AllocateBitmap(out_length, pool));
uint8_t* dst = (*out)->mutable_data();
int64_t bitmap_offset = 0;
for (auto bitmap : bitmaps) {
if (bitmap.AllSet()) {
bit_util::SetBitsTo(dst, bitmap_offset, bitmap.range.length, true);
} else {
internal::CopyBitmap(bitmap.data, bitmap.range.offset, bitmap.range.length, dst,
bitmap_offset);
}
bitmap_offset += bitmap.range.length;
}
return Status::OK();
}
// Write offsets in src into dst, adjusting them such that first_offset
// will be the first offset written.
template <typename Offset>
Status PutOffsets(const std::shared_ptr<Buffer>& src, Offset first_offset, Offset* dst,
Range* values_range);
// Concatenate buffers holding offsets into a single buffer of offsets,
// also computing the ranges of values spanned by each buffer of offsets.
template <typename Offset>
Status ConcatenateOffsets(const BufferVector& buffers, MemoryPool* pool,
std::shared_ptr<Buffer>* out,
std::vector<Range>* values_ranges) {
values_ranges->resize(buffers.size());
// allocate output buffer
int64_t out_length = 0;
for (const auto& buffer : buffers) {
out_length += buffer->size() / sizeof(Offset);
}
ARROW_ASSIGN_OR_RAISE(*out, AllocateBuffer((out_length + 1) * sizeof(Offset), pool));
auto dst = reinterpret_cast<Offset*>((*out)->mutable_data());
int64_t elements_length = 0;
Offset values_length = 0;
for (size_t i = 0; i < buffers.size(); ++i) {
// the first offset from buffers[i] will be adjusted to values_length
// (the cumulative length of values spanned by offsets in previous buffers)
RETURN_NOT_OK(PutOffsets<Offset>(buffers[i], values_length, &dst[elements_length],
&values_ranges->at(i)));
elements_length += buffers[i]->size() / sizeof(Offset);
values_length += static_cast<Offset>(values_ranges->at(i).length);
}
// the final element in dst is the length of all values spanned by the offsets
dst[out_length] = values_length;
return Status::OK();
}
template <typename Offset>
Status PutOffsets(const std::shared_ptr<Buffer>& src, Offset first_offset, Offset* dst,
Range* values_range) {
if (src->size() == 0) {
// It's allowed to have an empty offsets buffer for a 0-length array
// (see Array::Validate)
values_range->offset = 0;
values_range->length = 0;
return Status::OK();
}
// Get the range of offsets to transfer from src
auto src_begin = reinterpret_cast<const Offset*>(src->data());
auto src_end = reinterpret_cast<const Offset*>(src->data() + src->size());
// Compute the range of values which is spanned by this range of offsets
values_range->offset = src_begin[0];
values_range->length = *src_end - values_range->offset;
if (first_offset > std::numeric_limits<Offset>::max() - values_range->length) {
return Status::Invalid("offset overflow while concatenating arrays");
}
// Write offsets into dst, ensuring that the first offset written is
// first_offset
auto adjustment = first_offset - src_begin[0];
// NOTE: Concatenate can be called during IPC reads to append delta dictionaries.
// Avoid UB on non-validated input by doing the addition in the unsigned domain.
// (the result can later be validated using Array::ValidateFull)
std::transform(src_begin, src_end, dst, [adjustment](Offset offset) {
return SafeSignedAdd(offset, adjustment);
});
return Status::OK();
}
class ConcatenateImpl {
public:
ConcatenateImpl(const ArrayDataVector& in, MemoryPool* pool)
: in_(std::move(in)), pool_(pool), out_(std::make_shared<ArrayData>()) {
out_->type = in[0]->type;
for (size_t i = 0; i < in_.size(); ++i) {
out_->length = SafeSignedAdd(out_->length, in[i]->length);
if (out_->null_count == kUnknownNullCount ||
in[i]->null_count == kUnknownNullCount) {
out_->null_count = kUnknownNullCount;
continue;
}
out_->null_count = SafeSignedAdd(out_->null_count.load(), in[i]->null_count.load());
}
out_->buffers.resize(in[0]->buffers.size());
out_->child_data.resize(in[0]->child_data.size());
for (auto& data : out_->child_data) {
data = std::make_shared<ArrayData>();
}
}
Status Concatenate(std::shared_ptr<ArrayData>* out) && {
if (out_->null_count != 0 && internal::HasValidityBitmap(out_->type->id())) {
RETURN_NOT_OK(ConcatenateBitmaps(Bitmaps(0), pool_, &out_->buffers[0]));
}
RETURN_NOT_OK(VisitTypeInline(*out_->type, this));
*out = std::move(out_);
return Status::OK();
}
Status Visit(const NullType&) { return Status::OK(); }
Status Visit(const BooleanType&) {
return ConcatenateBitmaps(Bitmaps(1), pool_, &out_->buffers[1]);
}
Status Visit(const FixedWidthType& fixed) {
// Handles numbers, decimal128, decimal256, fixed_size_binary
ARROW_ASSIGN_OR_RAISE(auto buffers, Buffers(1, fixed));
return ConcatenateBuffers(buffers, pool_).Value(&out_->buffers[1]);
}
Status Visit(const BinaryType&) {
std::vector<Range> value_ranges;
ARROW_ASSIGN_OR_RAISE(auto index_buffers, Buffers(1, sizeof(int32_t)));
RETURN_NOT_OK(ConcatenateOffsets<int32_t>(index_buffers, pool_, &out_->buffers[1],
&value_ranges));
ARROW_ASSIGN_OR_RAISE(auto value_buffers, Buffers(2, value_ranges));
return ConcatenateBuffers(value_buffers, pool_).Value(&out_->buffers[2]);
}
Status Visit(const LargeBinaryType&) {
std::vector<Range> value_ranges;
ARROW_ASSIGN_OR_RAISE(auto index_buffers, Buffers(1, sizeof(int64_t)));
RETURN_NOT_OK(ConcatenateOffsets<int64_t>(index_buffers, pool_, &out_->buffers[1],
&value_ranges));
ARROW_ASSIGN_OR_RAISE(auto value_buffers, Buffers(2, value_ranges));
return ConcatenateBuffers(value_buffers, pool_).Value(&out_->buffers[2]);
}
Status Visit(const ListType&) {
std::vector<Range> value_ranges;
ARROW_ASSIGN_OR_RAISE(auto index_buffers, Buffers(1, sizeof(int32_t)));
RETURN_NOT_OK(ConcatenateOffsets<int32_t>(index_buffers, pool_, &out_->buffers[1],
&value_ranges));
ARROW_ASSIGN_OR_RAISE(auto child_data, ChildData(0, value_ranges));
return ConcatenateImpl(child_data, pool_).Concatenate(&out_->child_data[0]);
}
Status Visit(const LargeListType&) {
std::vector<Range> value_ranges;
ARROW_ASSIGN_OR_RAISE(auto index_buffers, Buffers(1, sizeof(int64_t)));
RETURN_NOT_OK(ConcatenateOffsets<int64_t>(index_buffers, pool_, &out_->buffers[1],
&value_ranges));
ARROW_ASSIGN_OR_RAISE(auto child_data, ChildData(0, value_ranges));
return ConcatenateImpl(child_data, pool_).Concatenate(&out_->child_data[0]);
}
Status Visit(const FixedSizeListType& fixed_size_list) {
ARROW_ASSIGN_OR_RAISE(auto child_data, ChildData(0, fixed_size_list.list_size()));
return ConcatenateImpl(child_data, pool_).Concatenate(&out_->child_data[0]);
}
Status Visit(const StructType& s) {
for (int i = 0; i < s.num_fields(); ++i) {
ARROW_ASSIGN_OR_RAISE(auto child_data, ChildData(i));
RETURN_NOT_OK(ConcatenateImpl(child_data, pool_).Concatenate(&out_->child_data[i]));
}
return Status::OK();
}
Result<BufferVector> UnifyDictionaries(const DictionaryType& d) {
BufferVector new_index_lookup;
ARROW_ASSIGN_OR_RAISE(auto unifier, DictionaryUnifier::Make(d.value_type()));
new_index_lookup.resize(in_.size());
for (size_t i = 0; i < in_.size(); i++) {
auto item = in_[i];
auto dictionary_array = MakeArray(item->dictionary);
RETURN_NOT_OK(unifier->Unify(*dictionary_array, &new_index_lookup[i]));
}
std::shared_ptr<Array> out_dictionary;
RETURN_NOT_OK(unifier->GetResultWithIndexType(d.index_type(), &out_dictionary));
out_->dictionary = out_dictionary->data();
return new_index_lookup;
}
// Transpose and concatenate dictionary indices
Result<std::shared_ptr<Buffer>> ConcatenateDictionaryIndices(
const DataType& index_type, const BufferVector& index_transpositions) {
const auto index_width =
internal::checked_cast<const FixedWidthType&>(index_type).bit_width() / 8;
int64_t out_length = 0;
for (const auto& data : in_) {
out_length += data->length;
}
ARROW_ASSIGN_OR_RAISE(auto out, AllocateBuffer(out_length * index_width, pool_));
uint8_t* out_data = out->mutable_data();
for (size_t i = 0; i < in_.size(); i++) {
const auto& data = in_[i];
auto transpose_map =
reinterpret_cast<const int32_t*>(index_transpositions[i]->data());
const uint8_t* src = data->GetValues<uint8_t>(1, 0);
if (!data->buffers[0]) {
RETURN_NOT_OK(internal::TransposeInts(index_type, index_type,
/*src=*/data->GetValues<uint8_t>(1, 0),
/*dest=*/out_data,
/*src_offset=*/data->offset,
/*dest_offset=*/0, /*length=*/data->length,
transpose_map));
} else {
internal::BitRunReader reader(data->buffers[0]->data(), data->offset,
data->length);
int64_t position = 0;
while (true) {
internal::BitRun run = reader.NextRun();
if (run.length == 0) break;
if (run.set) {
RETURN_NOT_OK(internal::TransposeInts(index_type, index_type, src,
/*dest=*/out_data,
/*src_offset=*/data->offset + position,
/*dest_offset=*/position, run.length,
transpose_map));
} else {
std::fill(out_data + (position * index_width),
out_data + (position + run.length) * index_width, 0x00);
}
position += run.length;
}
}
out_data += data->length * index_width;
}
return std::move(out);
}
Status Visit(const DictionaryType& d) {
auto fixed = internal::checked_cast<const FixedWidthType*>(d.index_type().get());
// Two cases: all the dictionaries are the same, or unification is
// required
bool dictionaries_same = true;
std::shared_ptr<Array> dictionary0 = MakeArray(in_[0]->dictionary);
for (size_t i = 1; i < in_.size(); ++i) {
if (!MakeArray(in_[i]->dictionary)->Equals(dictionary0)) {
dictionaries_same = false;
break;
}
}
ARROW_ASSIGN_OR_RAISE(auto index_buffers, Buffers(1, *fixed));
if (dictionaries_same) {
out_->dictionary = in_[0]->dictionary;
return ConcatenateBuffers(index_buffers, pool_).Value(&out_->buffers[1]);
} else {
ARROW_ASSIGN_OR_RAISE(auto index_lookup, UnifyDictionaries(d));
ARROW_ASSIGN_OR_RAISE(out_->buffers[1],
ConcatenateDictionaryIndices(*fixed, index_lookup));
return Status::OK();
}
}
Status Visit(const UnionType& u) {
// This implementation assumes that all input arrays are valid union arrays
// with same number of variants.
// Concatenate the type buffers.
ARROW_ASSIGN_OR_RAISE(auto type_buffers, Buffers(1, sizeof(int8_t)));
RETURN_NOT_OK(ConcatenateBuffers(type_buffers, pool_).Value(&out_->buffers[1]));
// Concatenate the child data. For sparse unions the child data is sliced
// based on the offset and length of the array data. For dense unions the
// child data is not sliced because this makes constructing the concatenated
// offsets buffer more simple. We could however choose to modify this and
// slice the child arrays and reflect this in the concatenated offsets
// buffer.
switch (u.mode()) {
case UnionMode::SPARSE: {
for (int i = 0; i < u.num_fields(); i++) {
ARROW_ASSIGN_OR_RAISE(auto child_data, ChildData(i));
RETURN_NOT_OK(
ConcatenateImpl(child_data, pool_).Concatenate(&out_->child_data[i]));
}
break;
}
case UnionMode::DENSE: {
for (int i = 0; i < u.num_fields(); i++) {
ArrayDataVector child_data(in_.size());
for (size_t j = 0; j < in_.size(); j++) {
child_data[j] = in_[j]->child_data[i];
}
RETURN_NOT_OK(
ConcatenateImpl(child_data, pool_).Concatenate(&out_->child_data[i]));
}
break;
}
}
// Concatenate offsets buffers for dense union arrays.
if (u.mode() == UnionMode::DENSE) {
// The number of offset values is equal to the number of type_ids in the
// concatenated type buffers.
TypedBufferBuilder<int32_t> builder;
RETURN_NOT_OK(builder.Reserve(out_->length));
// Initialize a vector for child array lengths. These are updated during
// iteration over the input arrays to track the concatenated child array
// lengths. These lengths are used as offsets for the concatenated offsets
// buffer.
std::vector<int32_t> offset_map(u.num_fields());
// Iterate over all input arrays.
for (size_t i = 0; i < in_.size(); i++) {
// Get sliced type ids and offsets.
auto type_ids = in_[i]->GetValues<int8_t>(1);
auto offset_values = in_[i]->GetValues<int32_t>(2);
// Iterate over all elements in the type buffer and append the updated
// offset to the concatenated offsets buffer.
for (auto j = 0; j < in_[i]->length; j++) {
int32_t offset;
if (internal::AddWithOverflow(offset_map[u.child_ids()[type_ids[j]]],
offset_values[j], &offset)) {
return Status::Invalid("Offset value overflow when concatenating arrays");
}
RETURN_NOT_OK(builder.Append(offset));
}
// Increment the offsets in the offset map for the next iteration.
for (int j = 0; j < u.num_fields(); j++) {
int64_t length;
if (internal::AddWithOverflow(static_cast<int64_t>(offset_map[j]),
in_[i]->child_data[j]->length, &length)) {
return Status::Invalid("Offset value overflow when concatenating arrays");
}
// Make sure we can safely downcast to int32_t.
if (length > std::numeric_limits<int32_t>::max()) {
return Status::Invalid("Length overflow when concatenating arrays");
}
offset_map[j] = static_cast<int32_t>(length);
}
}
ARROW_ASSIGN_OR_RAISE(out_->buffers[2], builder.Finish());
}
return Status::OK();
}
Status Visit(const ExtensionType& e) {
// XXX can we just concatenate their storage?
return Status::NotImplemented("concatenation of ", e);
}
private:
// NOTE: Concatenate() can be called during IPC reads to append delta dictionaries
// on non-validated input. Therefore, the input-checking SliceBufferSafe and
// ArrayData::SliceSafe are used below.
// Gather the index-th buffer of each input into a vector.
// Bytes are sliced with that input's offset and length.
// Note that BufferVector will not contain the buffer of in_[i] if it's
// nullptr.
Result<BufferVector> Buffers(size_t index) {
BufferVector buffers;
buffers.reserve(in_.size());
for (const auto& array_data : in_) {
const auto& buffer = array_data->buffers[index];
if (buffer != nullptr) {
ARROW_ASSIGN_OR_RAISE(
auto sliced_buffer,
SliceBufferSafe(buffer, array_data->offset, array_data->length));
buffers.push_back(std::move(sliced_buffer));
}
}
return buffers;
}
// Gather the index-th buffer of each input into a vector.
// Bytes are sliced with the explicitly passed ranges.
// Note that BufferVector will not contain the buffer of in_[i] if it's
// nullptr.
Result<BufferVector> Buffers(size_t index, const std::vector<Range>& ranges) {
DCHECK_EQ(in_.size(), ranges.size());
BufferVector buffers;
buffers.reserve(in_.size());
for (size_t i = 0; i < in_.size(); ++i) {
const auto& buffer = in_[i]->buffers[index];
if (buffer != nullptr) {
ARROW_ASSIGN_OR_RAISE(
auto sliced_buffer,
SliceBufferSafe(buffer, ranges[i].offset, ranges[i].length));
buffers.push_back(std::move(sliced_buffer));
} else {
DCHECK_EQ(ranges[i].length, 0);
}
}
return buffers;
}
// Gather the index-th buffer of each input into a vector.
// Buffers are assumed to contain elements of the given byte_width,
// those elements are sliced with that input's offset and length.
// Note that BufferVector will not contain the buffer of in_[i] if it's
// nullptr.
Result<BufferVector> Buffers(size_t index, int byte_width) {
BufferVector buffers;
buffers.reserve(in_.size());
for (const auto& array_data : in_) {
const auto& buffer = array_data->buffers[index];
if (buffer != nullptr) {
ARROW_ASSIGN_OR_RAISE(auto sliced_buffer,
SliceBufferSafe(buffer, array_data->offset * byte_width,
array_data->length * byte_width));
buffers.push_back(std::move(sliced_buffer));
}
}
return buffers;
}
// Gather the index-th buffer of each input into a vector.
// Buffers are assumed to contain elements of fixed.bit_width(),
// those elements are sliced with that input's offset and length.
// Note that BufferVector will not contain the buffer of in_[i] if it's
// nullptr.
Result<BufferVector> Buffers(size_t index, const FixedWidthType& fixed) {
DCHECK_EQ(fixed.bit_width() % 8, 0);
return Buffers(index, fixed.bit_width() / 8);
}
// Gather the index-th buffer of each input as a Bitmap
// into a vector of Bitmaps.
std::vector<Bitmap> Bitmaps(size_t index) {
std::vector<Bitmap> bitmaps(in_.size());
for (size_t i = 0; i < in_.size(); ++i) {
Range range(in_[i]->offset, in_[i]->length);
bitmaps[i] = Bitmap(in_[i]->buffers[index], range);
}
return bitmaps;
}
// Gather the index-th child_data of each input into a vector.
// Elements are sliced with that input's offset and length.
Result<ArrayDataVector> ChildData(size_t index) {
ArrayDataVector child_data(in_.size());
for (size_t i = 0; i < in_.size(); ++i) {
ARROW_ASSIGN_OR_RAISE(child_data[i], in_[i]->child_data[index]->SliceSafe(
in_[i]->offset, in_[i]->length));
}
return child_data;
}
// Gather the index-th child_data of each input into a vector.
// Elements are sliced with that input's offset and length multiplied by multiplier.
Result<ArrayDataVector> ChildData(size_t index, size_t multiplier) {
ArrayDataVector child_data(in_.size());
for (size_t i = 0; i < in_.size(); ++i) {
ARROW_ASSIGN_OR_RAISE(
child_data[i], in_[i]->child_data[index]->SliceSafe(
in_[i]->offset * multiplier, in_[i]->length * multiplier));
}
return child_data;
}
// Gather the index-th child_data of each input into a vector.
// Elements are sliced with the explicitly passed ranges.
Result<ArrayDataVector> ChildData(size_t index, const std::vector<Range>& ranges) {
DCHECK_EQ(in_.size(), ranges.size());
ArrayDataVector child_data(in_.size());
for (size_t i = 0; i < in_.size(); ++i) {
ARROW_ASSIGN_OR_RAISE(child_data[i], in_[i]->child_data[index]->SliceSafe(
ranges[i].offset, ranges[i].length));
}
return child_data;
}
const ArrayDataVector& in_;
MemoryPool* pool_;
std::shared_ptr<ArrayData> out_;
};
} // namespace
Result<std::shared_ptr<Array>> Concatenate(const ArrayVector& arrays, MemoryPool* pool) {
if (arrays.size() == 0) {
return Status::Invalid("Must pass at least one array");
}
// gather ArrayData of input arrays
ArrayDataVector data(arrays.size());
for (size_t i = 0; i < arrays.size(); ++i) {
if (!arrays[i]->type()->Equals(*arrays[0]->type())) {
return Status::Invalid("arrays to be concatenated must be identically typed, but ",
*arrays[0]->type(), " and ", *arrays[i]->type(),
" were encountered.");
}
data[i] = arrays[i]->data();
}
std::shared_ptr<ArrayData> out_data;
RETURN_NOT_OK(ConcatenateImpl(data, pool).Concatenate(&out_data));
return MakeArray(std::move(out_data));
}
} // namespace arrow