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# From https://github.com/harshagurnani/GoC_Varied_Inputs/blob/ankur/Tests/single_cell/test_single_cell_netpyne_load.py
from pathlib import Path
from netpyne import sim
import json
json_file = Path('LEMS_TwoCell_netpyne_data.json')
netParams_dict = None
simConfig_dict = None
with json_file.open(mode='r') as f:
netpyne_info = json.load(f)
netParams_dict = netpyne_info['net']['params']
simConfig_dict = netpyne_info['simConfig']
'''
simConfig_dict['saveJson'] = False # Prevent overwriting json gnerated by nml export
simConfig_dict['saveDat'] = True # Save data from this run
print('> Creating, simulating, analyzing...')
sim.createSimulateAnalyze(netParams=netParams_dict, simConfig=simConfig_dict,
output=False)
print(' - simConfig_dict (%s) with keys: \n %s'%(type(simConfig_dict),simConfig_dict.keys()))
print(' - netParams_dict (%s) with keys: \n %s'%(type(netParams_dict),netParams_dict.keys()))
print(" - netParams_dict['cellParams']: \n %s"%(netParams_dict['cellParams']))
'''
from netpyne.specs.simConfig import SimConfig
from netpyne.specs.netParams import NetParams
cfg = SimConfig(simConfig_dict)
cfg.validateNetParams = True
cfg.verbose = True
for cell in netParams_dict['cellParams']:
for sec in netParams_dict['cellParams'][cell]['secs']:
if len(netParams_dict['cellParams'][cell]['secs'][sec]['ions'])==0:
netParams_dict['cellParams'][cell]['secs'][sec]['ions']['none']={'e':0,'i':0,"o":0}
for ion_name in netParams_dict['cellParams'][cell]['secs'][sec]['ions']:
ion = netParams_dict['cellParams'][cell]['secs'][sec]['ions'][ion_name]
if not 'o' in ion: ion['o'] = 0
if not 'i' in ion: ion['i'] = 0
print('>> %s - %s - %s'%(cell, sec, ion))
netParams = NetParams(netParams_dict)
print(' - simConfig (%s) with keys: \n %s'%(type(cfg),cfg.todict().keys()))
print(' - netParams (%s) with keys: \n %s'%(type(netParams),netParams.todict().keys()))
import netpyne
#netpyne.sim.validator.validateNetParams = lambda a: (False, False)
from netpyne.sim.validator import validateNetParams
print('==============================')
validateNetParams(netParams)
print('==============================')
print('> Done...')