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BAU tests
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from codonPython.tolerance import check_tolerance
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import numpy as np
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import pandas as pd
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# import pandas.util.testing as pdt
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import pytest
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@pytest.mark.parametrize("t, y, to_exclude, poly_features, alpha, forecast, expected", [
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(
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np.array([1234,1235,1236,1237,1238,1239,1240,1241,1242]),
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np.array([1,2,3,4,5,5.5,6,6.5,7]),
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2,
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[1, 2],
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0.05,
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False,
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pd.DataFrame({
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'yhat_u': [
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8.11380197739608,
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9.051653693670929,
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7.127135023632205,
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7.735627110021585,
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],
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'yobs': [6.5, 7.0, 6.5, 7.0],
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'yhat': [
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7.214285714285714,
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8.071428571428573,
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6.500000000000002,
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6.821428571428574,
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],
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'yhat_l': [
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6.31476945117535,
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7.091203449186216,
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5.872864976367799,
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5.907230032835563,
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],
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'polynomial': [1, 1, 2, 2]
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})
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),
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(
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np.array([1234,1235,1236,1237,1238,1239,1240,1241,1242]),
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np.array([1,2,3,4,5,5.5,6,6.5,7]),
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2,
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[3],
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0.05,
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True,
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pd.DataFrame({
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'yhat_u': [
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6.753927165005773,
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7.214574732953706,
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7.218216279340497,
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7.3980478897523225,
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7.575355558900247,
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7.750571186675458,
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7.924372393971117
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],
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'yobs': [6.5, 7.0, np.nan, np.nan, np.nan, np.nan, np.nan],
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'yhat': [
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6.0000000000000036,
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5.571428571428576,
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5.5659511039999785,
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5.249235468428623,
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4.842301211809431,
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4.339894601476199,
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3.7367619047620617
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],
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'yhat_l': [
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5.2460728349942345,
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3.928282409903445,
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3.9136859286594596,
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3.100423047104923,
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2.1092468647186156,
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0.929218016276939,
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-0.45084858444699405
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],
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'polynomial': [3, 3, 3, 3, 3, 3, 3]
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})
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),
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])
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def test_tolerance_checking_BAU(t, y, to_exclude, poly_features, alpha, forecast, expected):
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obtained = check_tolerance(
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t,
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y,
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to_exclude=to_exclude,
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poly_features=poly_features,
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alpha=alpha,
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forecast=forecast,
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)
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assert expected.equals(obtained)
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#@pytest.mark.parametrize("t, y, to_exclude, poly_features, alpha, forecast", [])

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