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Merged
melvinbarbaux merged 5 commits into from
Jan 15, 2026
Merged

Fix minor bugs and correct unexpected behavior #25

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aa3f635
Fix minor bugs and correct unexpected behavior
pacocertal Jan 14, 2026
b923da1
v2
pacocertal Jan 15, 2026
c74212f
v3
melvinbarbaux Jan 15, 2026
5f6de57
Potential fix for pull request finding 'Unnecessary pass'
melvinbarbaux Jan 15, 2026
6242dd3
v3.1
melvinbarbaux Jan 15, 2026
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -4,6 +4,9 @@ All notable changes to this project will be documented in this file.

The format is based on "Keep a Changelog", and this project adheres to Semantic Versioning.

## 0.1.2
- Fix misc bugs

## 0.1.1
- Bump version metadata and docs.
- Allow docs/release workflows to run on numeric tags.
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/inductive/tsvm/vision/mnist.yaml
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Expand Up @@ -46,6 +46,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/appnp/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/chebnet/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/dynamic_label_propagation/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/gat/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/gcn/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/gcnii/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/grafn/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/grand/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/graph_mincuts/vision/mnist.yaml
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Expand Up @@ -46,6 +46,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/graphhop/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/graphsage/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/h_gcn/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/label_propagation/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/label_spreading/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/laplace_learning/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/lazy_random_walk/vision/mnist.yaml
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Expand Up @@ -46,6 +46,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/n_gcn/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/p_laplace_learning/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/planetoid/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/poisson_learning/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/poisson_mbo/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/sgc/vision/mnist.yaml
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Expand Up @@ -42,6 +42,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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4 changes: 4 additions & 0 deletions bench/configs/experiments/best/transductive/tsvm/vision/mnist.yaml
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Expand Up @@ -46,6 +46,10 @@ preprocess:
- id: vision.ensure_num_channels
params:
num_channels: 3
- id: vision.channels_order
params:
order: NHWC
- id: vision.squeeze
- id: vision.openclip
params:
batch_size: 64
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12 changes: 2 additions & 10 deletions bench/configs/experiments/smoke/inductive/adamatch/vision/mnist.yaml
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Expand Up @@ -43,14 +43,10 @@ preprocess:
- id: labels.encode
- id: vision.ensure_num_channels
params:
num_channels: 3
num_channels: 1
- id: vision.channels_order
params:
order: NCHW
- id: vision.resize
params:
height: 224
width: 224
- id: vision.normalize
params:
mean:
Expand Down Expand Up @@ -91,13 +87,9 @@ method:
max_epochs: 3
p_cutoff: 0.8
model:
classifier_id: image_pretrained
classifier_id: image_cnn
classifier_backend: torch
classifier_params:
model_name: resnet18
weights: DEFAULT
freeze_backbone: true
input_layout: channels_first
lr: 0.0001
weight_decay: 0.0001
batch_size: 32
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12 changes: 2 additions & 10 deletions bench/configs/experiments/smoke/inductive/adsh/vision/mnist.yaml
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Expand Up @@ -43,14 +43,10 @@ preprocess:
- id: labels.encode
- id: vision.ensure_num_channels
params:
num_channels: 3
num_channels: 1
- id: vision.channels_order
params:
order: NCHW
- id: vision.resize
params:
height: 224
width: 224
- id: vision.normalize
params:
mean:
Expand Down Expand Up @@ -92,13 +88,9 @@ method:
p_cutoff: 0.5
use_cat: true
model:
classifier_id: image_pretrained
classifier_id: image_cnn
classifier_backend: torch
classifier_params:
model_name: resnet18
weights: DEFAULT
freeze_backbone: true
input_layout: channels_first
lr: 0.0001
weight_decay: 0.0001
batch_size: 32
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12 changes: 2 additions & 10 deletions bench/configs/experiments/smoke/inductive/co_training/vision/mnist.yaml
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Expand Up @@ -43,14 +43,10 @@ preprocess:
- id: labels.encode
- id: vision.ensure_num_channels
params:
num_channels: 3
num_channels: 1
- id: vision.channels_order
params:
order: NCHW
- id: vision.resize
params:
height: 224
width: 224
- id: vision.normalize
params:
mean:
Expand All @@ -73,15 +69,11 @@ method:
device: auto
dtype: float32
params:
classifier_id: image_pretrained
classifier_id: image_cnn
classifier_backend: torch
max_iter: 5
k_per_class: 1
classifier_params:
model_name: resnet18
weights: DEFAULT
freeze_backbone: true
input_layout: channels_first
lr: 0.0001
weight_decay: 0.0001
batch_size: 32
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