echo "Decoding raw data files"

RAWDATANAME=$1 ######example: h0/thr/data-d1-f0-charge5-ninj50-2020_09_17__18_14_52__-0.raw

VPULSEL=$(echo $RAWDATANAME | sed 's/.*-charge\([0-9_]\+\).*/\1/g') ##########extraction charge injected example : 5

DATARAW=$(echo $RAWDATANAME | sed 's/.*-\([0-9_]\+\)__-.*/\1/g') ######## extraction timestamp raw data creation

FOLDER=$(echo $RAWDATANAME | sed 's/\([a-z0-9/]\+\)data-.*/\1/g') #######extraction folder example: h0/thr

LOG=$(echo $RAWDATANAME | sed 's/.*data-\([a-z0-9_-]\+\)/\1/g') #####log file name

PATHROOT=/home/alice/alice/output

PATHLOG=/home/alice/alice/output/log

current_time=$(date "+%y%m%d_%H%M%S")

starttime=$(date +"%H.%M.%S,%3N")

echo "-----------------------------------"

echo "Mapping at $starttime"

root.exe -l -b -q macro/mapping_mft.C+ | tee $PATHLOG/mapping\_$current_time.out

echo "Used charge : $VPULSEL"

echo "Chips name analysis done!!!"

echo "--------------------------------"

digittime=$(date +"%H.%M.%S,%3N")

echo "Digit analysis started at $digittime"

root -l -b -q macro/RawDec.C\(\"$PATHROOT/$RAWDATANAME.root\",\"$VPULSEL\"\)

if [ `expr $VPULSEL` -lt 10 ]; then

DIGITFILE=digit_coordinates_0$VPULSEL"_-"$DATARAW.txt

echo "Creation de txt file $DIGITFILE"

mv digit_coordinate.txt macro/$DIGITFILE

mv macro/$DIGITFILE Thr/$DIGITFILE

DIGITFILE=digit_coordinates_$VPULSEL"_-"$DATARAW.txt

echo "Creation de txt file $DIGITFILE"

mv digit_coordinate.txt macro/$DIGITFILE

mv macro/$DIGITFILE Thr/$DIGITFILE

if [ "$VPULSEL" == 30 ]; then

sh creationScurve.sh $RAWDATANAME

echo "-----------------------------------"

finishtime=$(date +"%H.%M.%S,%3N")

echo "Done at time $finishtime"