Updating SCOPe to version 2.05

sbliven · sbliven · commit f78e95991247 · 2015-07-23T17:50:43.000+02:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/scop/BerkeleyScopInstallation.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/scop/BerkeleyScopInstallation.java
@@ -28,7 +28,12 @@
 import java.util.Map;
 
 /**
- * The Structural Classification of Proteins at Berkeley Lab and UC Berkeley (<a href="http://scop.berkeley.edu/">http://scop.berkeley.edu/</a>).
+ * SCOPe:
+ * 
+ * The Structural Classification of Proteins (extended) at Berkeley Lab and UC Berkeley
+ * (<a href="http://scop.berkeley.edu/">http://scop.berkeley.edu/</a>).
+ * 
+ * <p>This provides updates to the MRC SCOP hierarchical classification.
  */
 public class BerkeleyScopInstallation extends ScopInstallation {
 
@@ -37,7 +42,8 @@ public class BerkeleyScopInstallation extends ScopInstallation {
 	String defaultBerkeleyScopVersion=ScopFactory.LATEST_VERSION;
 
 	/**
-	 * A map from SCOP version names which the Berkeley server offers as a download to an array of equivalent deprecated SCOP version names.
+	 * A map from SCOP version names which the Berkeley server offers as a
+	 * download to an array of equivalent deprecated SCOP version names.
 	 */
 	public static final Map<String,String[]> EQUIVALENT_VERSIONS = new HashMap<String,String[]>();
 
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/scop/ScopFactory.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/scop/ScopFactory.java
@@ -53,6 +53,7 @@ public class ScopFactory {
 	private static final Logger logger = LoggerFactory.getLogger(ScopFactory.class);
 
 	// berkeley 2
+	public static final String VERSION_2_0_5 = "2.05";
 	public static final String VERSION_2_0_4 = "2.04";
 	public static final String VERSION_2_0_3 = "2.03";
 	public static final String VERSION_2_0_2 = "2.02";
@@ -77,7 +78,7 @@ public class ScopFactory {
 	public static final String VERSION_1_55 = "1.55";
 
 	// The most recent version as of compilation time
-	public static final String LATEST_VERSION = VERSION_2_0_4;
+	public static final String LATEST_VERSION = VERSION_2_0_5;
 
 	// Hold one instance for each version
 	private static Map<String,ScopDatabase> versionedScopDBs = new HashMap<String, ScopDatabase>(); 
