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lafitalafita
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New feature, show phylogenetic trees for Multiple Structure Alignemnts
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‎biojava-phylo/src/main/java/org/biojava/nbio/phylo/DistanceMatrixCalculator.java‎

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@@ -28,8 +28,7 @@ public class DistanceMatrixCalculator {
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.getLogger(DistanceMatrixCalculator.class);
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/** Prevent instantiation */
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private DistanceMatrixCalculator() {
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}
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private DistanceMatrixCalculator() {}
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/**
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* The fractional dissimilarity (D) is defined as the percentage of sites

‎biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/MenuCreator.java‎

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@@ -65,6 +65,7 @@ public class MenuCreator {
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public static final String DOT_PLOT = "Show Dot Plot";
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public static final String PAIRWISE_ALIGN = "New Pairwise Alignment";
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public static final String MULTIPLE_ALIGN = "New Multiple Alignment";
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public static final String PHYLOGENETIC_TREE = "Phylogenetic Tree";
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protected static final int keyMask =
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Toolkit.getDefaultToolkit().getMenuShortcutKeyMask();
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