now also accepting old header line

andreasprlic · andreasprlic · commit 82104846da7e · 2016-11-30T09:38:58.000-05:00
diff --git a/biojava-modfinder/src/main/java/org/biojava/nbio/phosphosite/Site.java b/biojava-modfinder/src/main/java/org/biojava/nbio/phosphosite/Site.java
@@ -65,7 +65,8 @@ public static List<Site> parseSites(File f) throws IOException {
 
 
 		while ((line = buf.readLine()) != null){
-			if ( line.startsWith("GENE")) {
+			if ( line.startsWith("GENE") ||
+					line.startsWith("PROTEIN")) {
 
 				headerFields = parseHeaderFields(line);
 
