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Fix: properly use unique_bodyparts and identity_scores arguments in ShelfWriter.add_prediction #3112

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Fix: properly use unique_bodyparts and identity_scores arguments in ShelfWriter.add_prediction #3112

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7345526
Fix ShelfWriter.add_prediction()
maximpavliv Oct 6, 2025
9b879f3
Merge branch 'main' into maxim/fix_shelf_writer
maximpavliv Oct 14, 2025
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Merge branch 'main' into maxim/fix_shelf_writer
maximpavliv Oct 14, 2025
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Merge branch 'main' into maxim/fix_shelf_writer
MMathisLab Jan 9, 2026
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Merge branch 'main' into maxim/fix_shelf_writer
deruyter92 Jan 13, 2026
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Merge branch 'main' into maxim/fix_shelf_writer
deruyter92 Jan 15, 2026
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2 changes: 0 additions & 2 deletions deeplabcut/pose_estimation_pytorch/runners/shelving.py
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Original file line number Diff line number Diff line change
Expand Up @@ -124,15 +124,13 @@ def add_prediction(
scores = [bpt[:, 2:3] for bpt in bodyparts]

# full pickle has bodyparts and unique bodyparts in same array
unique_bodyparts = kwargs.get("unique_bodyparts", None)
if unique_bodyparts is not None:
unique_bpts = unique_bodyparts.transpose((1, 0, 2))
coordinates += [bpt[:, :2] for bpt in unique_bpts]
scores += [bpt[:, 2:] for bpt in unique_bpts]

output = dict(coordinates=(coordinates,), confidence=scores, costs=None)

identity_scores = kwargs.get("identity_scores", None)
if identity_scores is not None:
# Reshape id scores from (num_assemblies, num_bpts, num_individuals)
# to the original DLC full pickle format: (num_bpts, num_assem, num_ind)
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