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Location Refinement for Top-Down models #2699

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Merged
n-poulsen merged 2 commits into from
Aug 2, 2024
Merged

Location Refinement for Top-Down models #2699

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31e4829
add locref to top-down model heads
n-poulsen Jul 29, 2024
206d686
use ischecked in analyze videos
n-poulsen Jul 29, 2024
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13 changes: 6 additions & 7 deletions deeplabcut/gui/tabs/analyze_videos.py
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Original file line number Diff line number Diff line change
Expand Up @@ -330,13 +330,13 @@ def run_enabled(self):
shuffle = self.root.shuffle_value

videos = list(self.files)
save_as_csv = self.save_as_csv.checkState() == Qt.Checked
save_as_nwb = self.save_as_nwb.checkState() == Qt.Checked
filter_data = self.filter_predictions.checkState() == Qt.Checked
save_as_csv = self.save_as_csv.isChecked()
save_as_nwb = self.save_as_nwb.isChecked()
filter_data = self.filter_predictions.isChecked()
videotype = self.video_selection_widget.videotype_widget.currentText()
try:
create_video_all_detections = (
self.create_detections_video_checkbox.checkState() == Qt.Checked
self.create_detections_video_checkbox.isChecked()
)
except AttributeError:
create_video_all_detections = False
Expand All @@ -361,20 +361,19 @@ def run_enabled(self):
track_method=track_method,
)

if self.plot_trajectories.checkState() == Qt.Checked:
if self.plot_trajectories.isChecked():
bdpts = self.bodyparts_list_widget.selected_bodyparts
self.root.logger.debug(
f"Selected body parts for plot_trajectories: {bdpts}"
)
showfig = self.show_trajectory_plots.checkState() == Qt.Checked
deeplabcut.plot_trajectories(
config,
videos=videos,
displayedbodyparts=bdpts,
videotype=videotype,
shuffle=shuffle,
filtered=filter_data,
showfigures=showfig,
showfigures=self.show_trajectory_plots.isChecked(),
track_method=track_method,
)

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17 changes: 15 additions & 2 deletions deeplabcut/pose_estimation_pytorch/config/base/head_topdown.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,17 +4,22 @@ predictor:
type: HeatmapPredictor
apply_sigmoid: false
clip_scores: true
location_refinement: false
location_refinement: true
locref_std: 7.2801
target_generator:
type: HeatmapGaussianGenerator
num_heatmaps: "num_bodyparts"
pos_dist_thresh: 17
heatmap_mode: KEYPOINT
generate_locref: false
generate_locref: true
locref_std: 7.2801
criterion:
heatmap:
type: WeightedMSECriterion
weight: 1.0
locref:
type: WeightedHuberCriterion
weight: 0.05
heatmap_config:
channels:
- "backbone_output_channels"
Expand All @@ -23,3 +28,11 @@ heatmap_config:
final_conv:
out_channels: "num_bodyparts"
kernel_size: 1
locref_config:
channels:
- "backbone_output_channels"
kernel_size: []
strides: []
final_conv:
out_channels: "num_bodyparts x 2"
kernel_size: 1