FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\fd3F
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General Information
Symbol
Dmel\fd3F
Species
D. melanogaster
Name
forkhead domain 3F
Annotation Symbol
CG44123
Feature Type
protein_coding_gene
FlyBase ID
FBgn0264954
Gene Model Status
Current
Stock Availability
9 publicly available
Gene Summary
forkhead domain 3F (fd3F) encodes a trancription factor that contributes to the specialization of mechanosensory cilium. [Date last reviewed: 2019-09-12] (FlyBase Gene Snapshot)
All Summaries
Key Links
Genomic Location
Cytogenetic map
3F2-3F2
Sequence location
Recombination map
1-5
RefSeq locus
NC_004354 REGION:3802316..3811040
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
Gene Ontology (GO) Annotations (10 terms)
Molecular Function (5 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
enables transcription cis-regulatory region binding
inferred from direct assay
(Newton et al., 2012)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
enables DNA-binding transcription factor activity, RNA polymerase II-specific
inferred from biological aspect of ancestor with PANTHER:PTN000930906
(GO Reference Genome Project, 2011-)
enables DNA-binding transcription factor activity
inferred from electronic annotation with InterPro:IPR001766, InterPro:IPR030456, InterPro:IPR047119
(InterPro Project Members, 2004-)
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding
inferred from biological aspect of ancestor with PANTHER:PTN000930906
(GO Reference Genome Project, 2011-)
enables sequence-specific DNA binding
inferred from electronic annotation with InterPro:IPR001766, InterPro:IPR030456
(InterPro Project Members, 2004-)
Biological Process (4 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
involved_in anatomical structure morphogenesis
inferred from biological aspect of ancestor with PANTHER:PTN000930906
(GO Reference Genome Project, 2011-)
involved_in cell differentiation
inferred from biological aspect of ancestor with PANTHER:PTN000930906
(GO Reference Genome Project, 2011-)
involved_in regulation of DNA-templated transcription
inferred from electronic annotation with InterPro:IPR001766, InterPro:IPR030456, InterPro:IPR047119
(InterPro Project Members, 2004-)
involved_in regulation of transcription by RNA polymerase II
inferred from biological aspect of ancestor with PANTHER:PTN000930906
(GO Reference Genome Project, 2011-)
Cellular Component (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
is_active_in nucleus
inferred from biological aspect of ancestor with PANTHER:PTN000930906
(GO Reference Genome Project, 2011-)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Summaries
Gene Snapshot
forkhead domain 3F (fd3F) encodes a trancription factor that contributes to the specialization of mechanosensory cilium. [Date last reviewed: 2019-09-12]
Gene Group (FlyBase)
FORK HEAD BOX TRANSCRIPTION FACTORS -
The forkhead box family of transcription factors are sequence-specific DNA binding proteins that regulate transcription. They are characterized by approximately 110 amino acid DNA-binding domain known as the forkhead or winged helix. (Adapted from FBrf0173142).
Summary (Interactive Fly)

required for the specialization of mechanosensory cilium of chordotonal neurons

Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
2

Please see the JBrowse view of Dmel\fd3F for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry A0A4D6K5G3)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Gene model reviewed during 5.47

Stop-codon suppression (UGA) postulated; FBrf0234051.

Gene model reviewed during 6.25

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
fd3F-RC
FBtr0335187
NM_166991
3007
744
fd3F-RD
FBtr0474231
NM_001370027
3007
764
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
fd3F-PC
FBpp0307179
81.2
744
5.90
Q9W4Q1
NP_726889
AAF45895
fd3F-PD
FBpp0423184
83.2
764
6.01
QCD25226
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\fd3F using the Feature Mapper tool.

External Data
Crossreferences
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

NA

Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 1 -- 3
organism | ubiquitous

Comment: maternally deposited

(Fisher et al., 2012)
embryonic stage 1 -- 12
organism | uniform
(Lee and Frasch, 2004)
embryonic stage 4 -- 6
organism | faint | ubiquitous
(Fisher et al., 2012)
embryonic stage 7 -- 8
organism | faint | ubiquitous
(Fisher et al., 2012)
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 9 -- 10
organism | faint | ubiquitous
(Fisher et al., 2012)
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 11
chordotonal organ precursor cell
(Cachero et al., 2011)
embryonic stage 11 -- 12
organism | faint | ubiquitous
(Fisher et al., 2012)
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 12 -- 14
chordotonal organ precursor cell
(Lee and Frasch, 2004)
chordotonal neuron
(Cachero et al., 2011)
larval abdominal lch5 neuron
(Cachero et al., 2011)
vch1 neuron
(Cachero et al., 2011)
abdominal vch1 neuron
(Cachero et al., 2011)
abdominal vch2 neuron
(Cachero et al., 2011)
embryonic stage 13 -- 16
organism | faint | ubiquitous
(Fisher et al., 2012)
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 14
chordotonal organ precursor cell
(Newton et al., 2012)
dch3 neuron
(Cachero et al., 2011)
embryonic stage 15
chordotonal organ
(Lee and Frasch, 2004)
Additional Descriptive Data

fd3F transcript is expressed in the embryonic chordotonal organ precursors, including the precursors to lch5, lch1, vch1, vch2, dch3.

(Newton et al., 2012)

fd3F transcript is maternally expressed. Maternal and/or zygotic transcripts are uniformly distributed until mid-embryonic stage 12. During mid-stage 12, uniform levels of transcript distribution decrease and a spatially restricted pattern of expression appears in one lateral and one ventral cluster of cells within each trunk hemisegment as well as in clusters within the embryonic head. By embryonic stage 13, expression is restricted exclusively in these cell clusters, which have a distribution suggesting that they are chordotonal organ precursor cells.

(Lee and Frasch, 2004)
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 15
chordotonal organ precursor cell
(Newton et al., 2012)
Additional Descriptive Data

fd3F protein is expressed in the embryonic chordotonal organ precursors, including the precursors to lch5, lch1, vch1, vch2, dch3.

(Newton et al., 2012)
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\fd3F in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 2 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 12 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of fd3F
Transgenic constructs containing regulatory region of fd3F
Aberrations (Deficiencies and Duplications) ( 0 )
Inferred from experimentation ( 0 )
Inferred from location ( 6 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
Domainoid
eggNOG
Hieranoid
Homologene
Inparanoid
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
SonicParanoid
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (25)
Hsap\FOXC2
2 of 14
Yes
No
Hsap\FOXI1
2 of 14
Yes
No
Hsap\FOXI3
2 of 14
Yes
No
Hsap\FOXL1
2 of 14
Yes
No
Hsap\FOXL3
2 of 14
Yes
No
Hsap\FOXA3
1 of 14
No
No
Hsap\FOXB1
1 of 14
No
No
1  
Hsap\FOXB2
1 of 14
No
No
1  
Hsap\FOXC1
1 of 14
No
No
Hsap\FOXD4
1 of 14
No
No
Hsap\FOXD4L3
1 of 14
No
No
Hsap\FOXD4L4
1 of 14
No
No
Hsap\FOXD4L5
1 of 14
No
No
Hsap\FOXD4L6
1 of 14
No
No
Hsap\FOXG1
1 of 14
No
No
Hsap\FOXH1
1 of 14
No
No
Hsap\FOXI2
1 of 14
No
No
Hsap\FOXK1
1 of 14
No
No
Hsap\FOXK2
1 of 14
No
No
Hsap\FOXL3-OT1
1 of 14
No
No
Hsap\FOXM1
1 of 14
No
No
1  
Hsap\FOXP1
1 of 14
No
No
1  
Hsap\FOXP2
1 of 14
No
No
1  
Hsap\FOXP4
1 of 14
No
No
Hsap\FOXS1
1 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
Domainoid
eggNOG
Hieranoid
Homologene
Inparanoid
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
SonicParanoid
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (18)
Rnor\Foxc2
2 of 14
Yes
No
Rnor\Foxi1
2 of 14
Yes
No
Rnor\Foxl3
2 of 14
Yes
No
Rnor\Foxa3
1 of 14
No
No
Rnor\Foxb2
1 of 14
No
No
Rnor\Foxc1
1 of 14
No
No
Rnor\Foxg1
1 of 14
No
No
Rnor\Foxh1
1 of 14
No
No
Rnor\Foxi3
1 of 14
No
No
Rnor\Foxj1
1 of 14
No
No
Rnor\Foxk1
1 of 14
No
No
Rnor\Foxk2
1 of 14
No
No
Rnor\Foxl1
1 of 14
No
No
Rnor\Foxp1
1 of 14
No
No
Rnor\Foxp2
1 of 14
No
No
Rnor\Foxp4
1 of 14
No
No
Rnor\Foxq1
1 of 14
No
No
Rnor\Foxs1
1 of 14
No
No
Mus musculus (laboratory mouse) (19)
Mmus\Foxc2
2 of 14
Yes
No
Mmus\Foxi1
2 of 14
Yes
No
Mmus\Foxb1
1 of 14
No
No
Mmus\Foxb2
1 of 14
No
No
Mmus\Foxc1
1 of 14
No
No
Mmus\Foxd4
1 of 14
No
No
Mmus\Foxg1
1 of 14
No
No
Mmus\Foxh1
1 of 14
No
No
Mmus\Foxi2
1 of 14
No
No
Mmus\Foxi3
1 of 14
No
No
Mmus\Foxj1
1 of 14
No
No
Mmus\Foxk2
1 of 14
No
No
Mmus\Foxl1
1 of 14
No
No
Mmus\Foxl3
1 of 14
No
No
Mmus\Foxo6
1 of 14
No
No
Mmus\Foxp1
1 of 14
No
No
Mmus\Foxp2
1 of 14
No
No
Mmus\Foxp4
1 of 14
No
No
Mmus\Foxs1
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (19)
Xtro\brap
2 of 13
Yes
No
Xtro\foxc2
2 of 13
Yes
No
Xtro\foxi1
2 of 13
Yes
No
Xtro\foxi2
2 of 13
Yes
No
Xtro\foxi4.2
2 of 13
Yes
No
Xtro\foxl1
2 of 13
Yes
No
Xtro\foxa4
1 of 13
No
No
Xtro\foxb1
1 of 13
No
No
Xtro\foxc1
1 of 13
No
No
Xtro\foxd2
1 of 13
No
No
Xtro\foxd3
1 of 13
No
No
Xtro\foxd4l1.1
1 of 13
No
No
Xtro\foxd4l1.2
1 of 13
No
No
Xtro\foxg1
1 of 13
No
No
Xtro\foxi4.1
1 of 13
No
No
Xtro\foxl2
1 of 13
No
No
Xtro\foxm1
1 of 13
No
No
Xtro\foxo4
1 of 13
No
No
Xtro\qrich2
1 of 13
No
No
Danio rerio (Zebrafish) (38)
Drer\foxc1b
2 of 14
Yes
No
Drer\foxi1
2 of 14
Yes
No
Drer\foxl1
2 of 14
Yes
No
Drer\foxa1
1 of 14
No
No
Drer\foxa2
1 of 14
No
No
Drer\foxa
1 of 14
No
No
Drer\foxb1a
1 of 14
No
No
Drer\foxb1b
1 of 14
No
No
Drer\foxc1a
1 of 14
No
No
Drer\foxd1
1 of 14
No
No
Drer\foxd2
1 of 14
No
No
Drer\foxd3
1 of 14
No
No
Drer\foxd5
1 of 14
No
No
Drer\foxe1
1 of 14
No
No
Drer\foxe3
1 of 14
No
No
Drer\foxg1a
1 of 14
No
No
Drer\foxg1b
1 of 14
No
No
Drer\foxg1c
1 of 14
No
No
Drer\foxg1d
1 of 14
No
No
Drer\foxh1
1 of 14
No
No
Drer\foxi2
1 of 14
No
No
Drer\foxi3a
1 of 14
No
No
Drer\foxi3b
1 of 14
No
No
Drer\foxj1a
1 of 14
No
No
Drer\foxk1
1 of 14
No
No
Drer\foxk2a
1 of 14
No
No
Drer\foxk2b
1 of 14
No
No
Drer\foxl2l
1 of 14
No
No
Drer\foxl3
1 of 14
No
No
Drer\foxm1
1 of 14
No
No
Drer\foxo1b
1 of 14
No
No
Drer\foxo6b
1 of 14
No
No
Drer\foxp1b
1 of 14
No
No
Drer\foxp2
1 of 14
No
No
Drer\foxq1a
1 of 14
No
No
Drer\foxq1b
1 of 14
No
No
Drer\foxq2
1 of 14
No
No
Drer\si:rp71-45k5.2
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (11)
Cele\fkh-6
2 of 14
Yes
No
Cele\fkh-8
2 of 14
Yes
No
Cele\pes-1
2 of 14
Yes
No
Cele\daf-16
1 of 14
No
No
Cele\fkh-2
1 of 14
No
No
Cele\fkh-3
1 of 14
No
No
Cele\fkh-4
1 of 14
No
No
Cele\fkh-9
1 of 14
No
No
Cele\fkh-10
1 of 14
No
No
Cele\let-381
1 of 14
No
No
Cele\unc-130
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (11)
Agam\AgaP_AGAP000069
1 of 12
Yes
No
Agam\AgaP_AGAP000662
1 of 12
Yes
No
Agam\AgaP_AGAP001671
1 of 12
Yes
No
Agam\AgaP_AGAP002460
1 of 12
Yes
No
Agam\AgaP_AGAP005804
1 of 12
Yes
No
Agam\AgaP_AGAP005903
1 of 12
Yes
No
Agam\AgaP_AGAP006786
1 of 12
Yes
No
Agam\AgaP_AGAP008155
1 of 12
Yes
No
Agam\AgaP_AGAP009147
1 of 12
Yes
No
Agam\AgaP_AGAP012976
1 of 12
Yes
No
Agam\AgaP_AGAP013297
1 of 12
Yes
No
Arabidopsis thaliana (thale-cress) (0)
Saccharomyces cerevisiae (Brewer's yeast) (3)
Scer\FKH1
1 of 13
Yes
No
Scer\FKH2
1 of 13
Yes
No
Scer\HCM1
1 of 13
Yes
No
Schizosaccharomyces pombe (Fission yeast) (4)
Spom\mei4
2 of 12
Yes
No
Spom\sep1
2 of 12
Yes
No
Spom\fhl1
1 of 12
No
No
Spom\fkh2
1 of 12
No
No
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:fd3F. Refer to their site for version information.
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v9.1)
Gene Symbol
Score
Source
Compara
Domainoid
eggNOG
Homologene
Inparanoid
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
SonicParanoid
Alignment
Drosophila melanogaster (Fruit fly) (16)
CG32006
2 of 13
fd19B
2 of 13
fd59A
2 of 13
fd96Ca
2 of 13
fd96Cb
2 of 13
fd102C
2 of 13
FoxL1
2 of 13
slp1
2 of 13
bin
1 of 13
Crg-1
1 of 13
croc
1 of 13
fkh
1 of 13
FoxK
1 of 13
foxo
1 of 13
FoxP
1 of 13
slp2
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    FlyBase
    External Links
    External Data
    Linkouts
    Class of Gene
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    X
    Recombination map
    1-5
    Cytogenetic map
    3F2-3F2
    Sequence location
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    3F2-3F2
    Limits computationally determined from genome sequence between P{EP}EP1200EP1200&P{EP}EP1343 and P{EP}CG2930EP1352
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    3F-3F
    (Lee, 2002.1.4)
    Experimentally Determined Recombination Data
    Location

    1-5

    (FlyBase, 2016)

    1-4.6

    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (9)
    Genomic Clones (11)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (8)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
      Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
        Other clones
        RNAi and Array Information
        Linkouts
        Antibody Information
        Laboratory Generated Antibodies
         

        polyclonal

        (Newton et al., 2012)
        Commercially Available Antibodies
         
        Cell Line Information
        Publicly Available Cell Lines
         
          Other Stable Cell Lines
           
            Other Comments

            "fd3F" is not a pseudogene; its indels maintain a reading frame.

            (Hogan and Bettencourt, 2009)

            dsRNA has been made from templates generated with primers directed against this gene. RNAi of fd3F results in reduced arborization of ddaD and ddaE neurons and defects in dendrite morphogenesis.

            (Parrish et al., 2006)

            RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.

            (Boutros et al., 2004)
            Relationship to Other Genes
            Source for database merge of

            Source for merge of: fd3F CG12632

            (FlyBase, 1996-)

            Source for merge of: CG15238 CG18771

            (FlyBase Genome Annotators, 2002-2003)

            Source for merge of: fd3F CG32779

            (Newton et al., 2012)
            Additional comments

            Annotations CG12632 and CG32779 merged as CG44123 in release 5.47 of the genome annotation. In addition to data described in FBrf0218629, merge supported by second tier modENCODE RNA-seq junction data (FBrf0217580).

            (FlyBase Genome Annotators, 2012)

            Annotations CG15238 and CG18771 merged as CG32779 in release 3 of the genome annotation.

            (FlyBase Genome Annotators, 2002-2003)

            "l(1)G0433" may affect "fd3F".

            (Peter et al., 2002)

            Source for merge of fd3F CG12632 was sequence comparison ( date:021112 ).

            (FlyBase, 1996-)
            Nomenclature History
            Source for database identify of
            Nomenclature comments
            Etymology
            Synonyms and Secondary IDs (11)
            Datasets (0)
            Study focus (0)
            Experimental Role
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            Study result (0)
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            External Crossreferences and Linkouts ( 32 )
            Sequence Crossreferences
            NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
            GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
            GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
            RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
            UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
            UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
            Other crossreferences
            AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
            BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
            DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
            EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
            FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
            InterPro - A database of protein families, domains and functional sites
            KEGG Genes - Molecular building blocks of life in the genomic space.
            MARRVEL_MODEL - MARRVEL (model organism gene)
            Linkouts
            Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
            DroID - A comprehensive database of gene and protein interactions.
            FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
            FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
            iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
            Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
            References (57)