Showing posts with label infoviz. Show all posts
Showing posts with label infoviz. Show all posts

Sunday, March 11, 2018

Are you smarter than a fifth grader?

"the editorial principle that nothing should be given both graphically and in tabular form has to become unacceptable" - John W. Tukey

Back to school

In the United States, most fifth grade students are learning about a fairly powerful type of visualization of data. In some states, it starts at an even younger age, in the 4th grade. As classwork and homework, they will produce many of these plots:


They are called stem-and-leaf displays, or stem-and-leaf plots. The left side of the vertical bar is the stem, and the right side, the leaves. The key or scale is important as it indicates the multiplier. The top row in the image above has a stem of 2 and leaves 0,6 and 7, representing 20, 26 and 27. Invented by John W. Tukey in the 1970's (see the statistics section of part II and the classics section of part V of my "ex-libris" series), few people use them once they leave school. Doing stem-and-leaf plots by hand is not the most entertaining thing to do. The original plot was also limited to handling small data sets. But there is a variation on the original display that gets around these limitations.

"Data! Data! Data!"

Powerful? Why did I say that in the first paragraph?

And why should stem-and-leaf plots be of interest to students, teachers, analysts, data scientists, auditors, statisticians, economists, managers and other people teaching, learning or working with data? There are a few reasons, with the two most important being:
  • they represent not only the overall distribution of data, but the individual data points themselves (or a close approximation)
  • They can be more useful than histograms as data size increases, particularly on long tailed distributions

 

An example with annual salaries

We will look at a data set of the salaries for government employees in Texas (over 690,000 values, from an August 2016 snapshot of the data from the Texas Tribune Salary Explorer). From this we create a histogram, one of the most popular plot for looking at distributions. As can be seen, we can't really tell any detail (left is Python Pandas hist, right is R hist):


It really doesn't matter the language or software package used, we get one very large bar with almost all the observations, and perhaps (as in R or seaborn), a second tiny bar next to it. A box plot (another plot popularized by John Tukey) would have been a bit more useful here adding some "outliers" dots. And, how about a stem-and-leaf plot? We are not going to sort and draw something by hand with close to 700,000 values...

Fortunately, I've built a package (python modules plus a command line tool) that handles stem-and-leaf plots at that scale (and much, much larger). It is available from http://stemgraphic.org and also from github (the code has been available as open source since 2016) and pypi (pip install stemgraphic).
So how does it look for the same data set?


Now we can see a lot of detail. Scale was automatically found to be optimal as 10000, with consecutive stems ranging from 0 to 35 (350000). We can read numbers directly, without having to refer to a color coded legend or other similar approach. At the bottom, we see a value of 0.00 (who works and is considered employed for $0 annual income? apparently, quite a few in this data set), and a maximum of $5,266,667.00 (hint, sports related), we see a median of about $42K and we see multiple classes of employees, ranging from non managerial, to middle management, upper management and beyond ($350,000+). We've limited the display here to 500 observations, and that is what the aggregate count on the leftmost column tells us. Notice also how we have a convenient sub-binning going on, allowing us to see which $1000 ranges are more common. All this from one simple display. And of course we can further trim, zoom, filter or limit what data or slice of data we want to inspect.

Knowing your data (particularly at scale) is a fundamental first step to turning it into insight. Here, we were able to know our data a lot better by simply using the function stem_graphic() instead of hist() (or use the included stem command line tool - compatible with Windows, Mac OS and Linux).

Tune in next episode...

Customers already using my software products for data governance, anomaly detection and data quality are already familiar with it. Many other companies, universities and individuals are using stemgraphic in one way or another. For everybody else, hopefully this has raised your interest, you'll master this visualization in no time, and you'll be able to answer the title question affirmatively...

Stemgraphic has another dozen types of visualizations, including some interactive and beyond numbers, adding support for categorical data and for text (as of version 0.5.x). In the following months I'll talk a bit more about a few of them.


Francois Dion
@f_dion

N.B. This article was originally published on LinkedIn at:

https://www.linkedin.com/pulse/you-smarter-than-fifth-grader-francois-dion/

Tuesday, February 27, 2018

Stemgraphic v.0.5.x: stem-and-leaf EDA and visualization for numbers, categoricals and text


 Stemgraphic open source


In 2016 at PyDataCarolinas, I open-sourced my stem-and-leaf toolkit for exploratory data analysis and visualization. Later, in October 2016 I had posted the link to the video.



Stemgraphic.alpha


With the 0.5.x releases, I've introduced the categorical and text support. In the next few weeks, I'll be introducing some of the features, particularly those found in the new stemgraphic.alpha module of the stemgraphic package, such as back-to-back plots and stem-and-leaf heatmaps:




But if you want to get started, check out stemgraphic.org, and the github repo (especially the notebooks).

Github Repo

https://github.com/fdion/stemgraphic


Francois Dion
@f_dion

Friday, August 11, 2017

Readings in Visualization

"Ex-Libris" part V: Visualization


Part 5 of my "ex-libris" of a Data Scientist is now available. This one is about visualization.

Starting from a historical perspective, particularly of statistical visualization, and covering a few classic must have books, the article then goes on to cover graphic design, cartography, information architecture and design and concludes with many recent books on information visualization (specific Python and R books to create these were listed in part IV of this series). In all, about 66 books on the subject.

Just follow the link to the LinkedIn post to go directly to it:



From Jacques Bertin’s Semiology of Graphics

"Le plus court croquis m'en dit plus long qu'un long rapport", Napoleon Ier

See also

Part I was on "data and databases": "ex-libris" of a Data Scientist - Part i
Part II, was on "models": "ex-libris" of a Data Scientist - Part II

Part III, was on "technology": "ex-libris" of a Data Scientist - Part III
Part IV, was on "code": "ex-libris" of a Data Scientist - Part IV
Part VI will be on communication. Bonus after that will be on management / leadership.
Francois Dion
@f_dion

P.S.
Je vais aussi avoir une liste de publications en francais
En el futuro cercano voy a hacer una lista en espanol tambien

Thursday, October 20, 2016

Stemgraphic, a new visualization tool

PyData Carolinas 2016

At PyData Carolinas 2016 I presented the talk Stemgraphic: A Stem-and-Leaf Plot for the Age of Big Data.

Intro

The stem-and-leaf plot is one of the most powerful tools not found in a data scientist or statistician’s toolbox. If we go back in time thirty some years we find the exact opposite. What happened to the stem-and-leaf plot? Finding the answer led me to design and implement an improved graphical version of the stem-and-leaf plot, as a python package. As a companion to the talk, a printed research paper was provided to the audience (a PDF is now available through artchiv.es)

The talk




Thanks to the organizers of PyData Carolinas, videos of all the talks and tutorials have been posted on youtube. In just 30 minutes, this is a great way to learn more about stemgraphic and the history of the stem-and-leaf plot for EDA work. This updated version does include the animated intro sequence, but unfortunately the sound was recorded from the microphone, and not the mixer. You can see the intro sequence in higher audio and video quality on the main page of the website below.

Stemgraphic.org

I've created a web site for stemgraphic, as I'll be posting some tutorials and demo some of the more advanced features, particularly as to how stemgraphic can be used in a data science pipeline, as a data wrangling tool, as an intermediary to big data on HDFS, as a visual validation for building models and as a superior distribution plot, particularly when faced with non uniform distributions or distributions showing a high degree of skewness (long tails).

Github Repo

https://github.com/fdion/stemgraphic


Francois Dion
@f_dion